Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01742 ATGACAACGCAGTCAGAAATAACGTTTTTGGGAACAGTTTCTCACCCAAACCTGGTGAAGCTTTTGGGTTACTGCTGTGACGATGTGGAGTTTCTCCTTGTGTACGAATTCATGCCAAAGGGAAGCTTGGAGACTCATCTATTTTGGAGAAATAATAACACAGAACCTTTGTCTTGGGACACTCGACTGAAAATAGCTATCGGTGCAGCTCGGGGTTTGGCTTATTTGCACACCTCGGATAAGCAAATCATATACAGAGATTTCAAAGCCTCTAATATACTACTTGATGAGGAGTTCAACGCGAAAATATCAGATTTTGGTTTGGCGAAACTAGGCCCTCCTGCGGGAGATTCACACGTGACGACGAGAATCATAGGAACATATGGTTATGCTGCTCCAGAATACATTGCAACAGGTCACCTATATGTGAAAAGTGATGTTTATGGATTTGGTGTGGTGCTGCTTGAAATGCTGAAAGGGATGAGAGCACTTGATCAAAACCGGCCTTCAGGGCAGCAGAATCTGGTTGAATGGATTAAGCCTTATCTGTCTGATAAAACTAAGTTGAAAACTGATATTATGGATGAGAAGATCGAGGGTCAGTATTCAAGCAATGCAGCACTCAAAGCAGCACAACTTACTCTAAAATGTCTTGAAACTGACCCTAAACAACGTCCTTCCATGCAACAAGTTCTTCACACCTTAGAAACCATCCAAGCTATCAAACTTAGAAGGAGGAAAAGAACCAAACATTGCTCTAATAAGTTCGCAACTATCAACAATTTTCACTAG 792 0.4167 MTTQSEITFLGTVSHPNLVKLLGYCCDDVEFLLVYEFMPKGSLETHLFWRNNNTEPLSWDTRLKIAIGAARGLAYLHTSDKQIIYRDFKASNILLDEEFNAKISDFGLAKLGPPAGDSHVTTRIIGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLKGMRALDQNRPSGQQNLVEWIKPYLSDKTKLKTDIMDEKIEGQYSSNAALKAAQLTLKCLETDPKQRPSMQQVLHTLETIQAIKLRRRKRTKHCSNKFATINNFH 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01742 263 CDD STKc_IRAK 4 238 - -
Viun2g01742 263 ProSitePatterns Serine/Threonine protein kinases active-site signature. 83 95 IPR008271 GO:0004672|GO:0006468
Viun2g01742 263 Gene3D Transferase(Phosphotransferase) domain 1 39 261 - -
Viun2g01742 263 SUPERFAMILY Protein kinase-like (PK-like) 3 240 IPR011009 -
Viun2g01742 263 PIRSF ILK 2 256 - -
Viun2g01742 263 Pfam Protein kinase domain 3 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01742 263 Gene3D Phosphorylase Kinase; domain 1 2 38 - -
Viun2g01742 263 ProSiteProfiles Protein kinase domain profile. 1 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01742 263 FunFam Serine/threonine-protein kinase PBS1 38 254 - -
Viun2g01742 263 PANTHER OS01G0588500 PROTEIN-RELATED 4 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01742 Viun-Chr2 26773487 26776141 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01742 4 241 Receptor kinase-like Gene Family AT4G02010 49.378 7.19e-77 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun2g01742 Pkinase 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01742 - - gmx:100778116 425.631