Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01738 ATGGATTCCTCGCAGACCAACAATACCACTTTGCTCACTAACTTACTACTCTTCAACAACACCCTCCAACCAGAGTTGATCAGGAGCGTGCATGTGTACCGGCAAGGGGATGAAGAGGAAAGGGCAGTTGAGAGGGAGTTTCTGTTTTCAGAGTGTGGTTCCTATGGGGAAATGCAGGCTACCCCAATTCTTAAATTTGTCAAATCCCATGTTTCTCAAGTGTTCGAAGGGTACAAGAATGGAGTGTGGCTTTGTATCTTTGCCTTTCATGCTCATCAAACTCCTCAATTTTCCCGCATTCCTCCGTTTTTGTTGGTCTCAAGAAACCCAAAGCTTCAGATGATTCCAAACTTGCTCCATGATCTCCAGGTGATATATAAGTTGGATAGGAAGGAGGAAGACAAAGACACAGCTCTAGGCTCTACAAGGGAAGAATGTCAAGGAAACAGAAACAATTTCCAGCCATCAGAGAAAGTCTTTCCTGTTCTTGATCAGGATCTCAATTATCTTCCTTACGAAGAAGGCGAGTCCGAATTACTGGACAATGAGACAGATGTTGAAAGCTCACCAGGTTTGCTAGGGAAAAAGAAAAGGGCACCCAGTGACCTGGTAGCAAAGATTTCCTTATCAGATTTGGTCCAGTACTTTGGTATGCCAATCGTAGAAGCATCAAGAAATCTAAATGTTGGGCTTACTGTTCTCAAGAGAAAGTGCAGAGAATTTGGTATTCCTCGCTGGCCTCATAGAAAGATCAAGTCACTTGATAGTCTCATTCATGATCTTCAGGAAGAAGCAAAGAACCAAGAATTGGAGAACATGGATGCAGCAATGGCAGTGGCAAAGAGACAAAGGATGTTGGAGTGTGAAAAGGAAAACATAGAGAAGAAGCCTTTCATGGACATTCAAACCGAGACCAAGAGGTTTAGGCAAGATGTTTTCAAGAGAAGACACAGAGCAAGAGCGGTTGGAAAACATAATTCTACAGTATCCAACACATAG 999 0.4304 MDSSQTNNTTLLTNLLLFNNTLQPELIRSVHVYRQGDEEERAVEREFLFSECGSYGEMQATPILKFVKSHVSQVFEGYKNGVWLCIFAFHAHQTPQFSRIPPFLLVSRNPKLQMIPNLLHDLQVIYKLDRKEEDKDTALGSTREECQGNRNNFQPSEKVFPVLDQDLNYLPYEEGESELLDNETDVESSPGLLGKKKRAPSDLVAKISLSDLVQYFGMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKNQELENMDAAMAVAKRQRMLECEKENIEKKPFMDIQTETKRFRQDVFKRRHRARAVGKHNSTVSNT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01738 332 Coils Coil 251 283 - -
Viun2g01738 332 ProSiteProfiles RWP-RK domain profile. 189 274 IPR003035 -
Viun2g01738 332 PANTHER PROTEIN RKD4 38 327 IPR044607 GO:0003700
Viun2g01738 332 Pfam RWP-RK domain 207 254 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01738 Viun-Chr2 26763606 26768531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01738 25 332 AtRKD Transcription Factor Family AT4G35590 47.531 5.03e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Viun2g01738 RWP-RK 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01738 - - gmx:113001653 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01738 2 26763606 26768531 Viun2g01738 2 26763606 26768531 ECH