Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01712 ATGCATAGGTGCCACCTCCCTTTTTGTGAATCTATCAGGCATGCTCCTTATCCAACCATGAATAAAGTTTGGCCCTTGGTTTTCATGGTTCTTTCCATTGGATGCTTTTCGAATGGGAGTGGAAGGCAAAATTCCACAGTACCAGATTTTGTAAATATTGGGGCACTCTTCTCTTACAATACCAGTGTTGGTAGAACTATAAAAATTGCATTAGAAGCTGCGTTTGAAGATATAAATTCTGATCCAACTATTCTTGGTAGAACCAAGCTAAACCTCTCTATGCAAGAAGATTCTAAGTACAGAGGTTTCCTGAGCATTGCCGAGGTTTTGCAGGTCATGGCAAGACAGACGGTGGCGATAATAGGCCCACATAGTTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTTCAAGTTCCTCTTCTGTCATTTACAGCTTTTGACCCTACTCTTTCTTCGCTTCAATTCCCATTCTTTATTAGAACTTGCCATAGTGATCTTTATCAAATGACTGCAATAGCAGACCTTGTTGACTACTATGGCTGGAAAGATGTTATCGCAGTCTTTCCTGATGATGATAATGGTAGAAATGGAATTAGCACATTAGGAGATAAGCTTGCAGAGAGGCGTTGCAAGATATCATATAAAGCAGCTTTGAGTCCCCAAGCATCTATGGAAGAGATTAGTAATGTGCTTGTGCAGGTGGCTCTGGCAGAATCACGGATAATAGTTGTTCATGGCAATACTCAACTTGGCCCTCAGGTGTTCACAGTTGCAAAGAATCTTGGGATGATGGGAACTGGTTATGTCTGGATAGCCACTGCTTTTCTCTCTGCTCTGCTTGATATCAACTATCCCCTCTCTCCCGATTCAATGGATGAAATTCAAGGAGTTCTTACACCACGTATCTACACGCCAAATTCAGAGCGCAGAAGAAGTTTTGTTTCTAGGTGGAAAAACTTGACCAGTGGAAATACTGCCAATGTCAAACTTGGATTGAGTTTTCTACCTCTCTATGCATATGACACTGTTTATGCACTTGCTCATGCTCTTGATGCATTTTTCAAAGAAGGTAACCGGATTACATTCTCAACTGATTCAAAGCTGTCTAACATACATGGAAACAACTTGAATCTTGAGGCCTTGAAAATCTTTAATGAAGGAAATCTGTTACGTAGAAAGATCTATGAGGTAAACATGACTGGTGTGTCAGGTCCATTCAAGTATGCATCCGATAGAAACCTTGCTAATCCTGCATATGAAATCATTAATGTGATTGGAACAGGAACTCGAAGGATTGGTTATTGGTCTAATCACTCTGGTTTATCAGTTGTTCCTCCAGAAACTCTTTATTCGAAACCAGCCAATCTGCCCAGGAAAAATCAAAAGCTGTTTCCTGTGATTTGGCCTGGAAACACAGATGAAAGACCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGCTCTTAAAGATTGGAGTACCAAGAGGTGTTAGTTACCAGGAGTTTGTCTCACAGATAAAAGGCACTGACATGTTTGAGGGATTCTGCATTGATGTATTTCTTGCTGCAGTGAATCTGTTGCCTTATGCTGTCCCCTACAGGTTCATCTCATACGGGGATGGTAAGAACAATCCTAGTATGACTGAGCTTGTCCGTCTGATCACAACGGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTTGTGGTAGTAGCACCCATTGGGCAGGCAGAATCCAATGCTTTGGCCTTTTTGGCCCCTTTTACACCAAAGATGTGGTTTGTGACAGCTGCCTTTTTCATATTAGTGGGAGCTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCCAAAAAGCAAGTAGTCACCGTTTTATGGTTTAGTTTTTCAACAATGTTCTTTTCCCACAGGGAAAATACAGTGAGCACACTTGGTCGTGTAGTGTTGATTATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTATACGGCAAGTCTGACCTCAATCCTCACAGTGCAACAACTTTATTCTCCCATTAAAGGCATTGAAAGTCTAGTAAACAGCAAAGTGCCTATCGGCTACACGCAGGGTTCTTTTGCAAAAAACTACTTAGTTCAGGAAATTCATATTGAGGAGTCTAGGCTAGTTCCTCTGACAACACCAGAAGAAATTGCTAAAGCACTGAAAAATGGTCCCGAAAATGGGGGTGTTGCTGCTTACATTGACGAGCGTGCCTACACTGACATCTTCCTCTCCAGCCGTTGTGATTTAACTGTCGTAGGTCAGGAGTTCACCAGAAATGGTTGGGGATTTGCGTTTCCACGGGACTCGCCATTAGCAGTTGATTTGTCAACTGCCATATTGCAGATGATAGATAATGGAGATTTGCAAAGGATCCATGACAAGTGGCTTTTGAGTAGTGCTTGCTTATCACAAGGGGCAAAGCTTGAAGTGGAAAGACTCCAACTTAGAAGCTTTTGGGGGCTCTATGCGATCTGTGGAGTTGCGTGCTTGCTTGCACTCTTCATGTATCTTATACAGATTTTGAGGCAATACCAGAAGCACCACTCAGAGGAACCCGAGTCCATTGACGGCCAAAGCTTAGGATCATCATCAAGATCTTCACGTCTCAAGACTTTCCTTTCATTTGCAGATGAGAAAGAAGAGACTGTGAAGAGCCGCTCCAAGAGAAGAAAAATGGAGAGGATCTCATACCGAAGCACTGAAGGAAGCACATCCATCAGCTCCAATAAGGAAATTGCTTCACGCAGAAGTGAATATGCTAGTGAACTATTATGA 2880 0.4191 MHRCHLPFCESIRHAPYPTMNKVWPLVFMVLSIGCFSNGSGRQNSTVPDFVNIGALFSYNTSVGRTIKIALEAAFEDINSDPTILGRTKLNLSMQEDSKYRGFLSIAEVLQVMARQTVAIIGPHSSVTAHVITHIANELQVPLLSFTAFDPTLSSLQFPFFIRTCHSDLYQMTAIADLVDYYGWKDVIAVFPDDDNGRNGISTLGDKLAERRCKISYKAALSPQASMEEISNVLVQVALAESRIIVVHGNTQLGPQVFTVAKNLGMMGTGYVWIATAFLSALLDINYPLSPDSMDEIQGVLTPRIYTPNSERRRSFVSRWKNLTSGNTANVKLGLSFLPLYAYDTVYALAHALDAFFKEGNRITFSTDSKLSNIHGNNLNLEALKIFNEGNLLRRKIYEVNMTGVSGPFKYASDRNLANPAYEIINVIGTGTRRIGYWSNHSGLSVVPPETLYSKPANLPRKNQKLFPVIWPGNTDERPRGWVFPNNGRLLKIGVPRGVSYQEFVSQIKGTDMFEGFCIDVFLAAVNLLPYAVPYRFISYGDGKNNPSMTELVRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPIGQAESNALAFLAPFTPKMWFVTAAFFILVGAVVWILEHRVNDEFRGPPKKQVVTVLWFSFSTMFFSHRENTVSTLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLYSPIKGIESLVNSKVPIGYTQGSFAKNYLVQEIHIEESRLVPLTTPEEIAKALKNGPENGGVAAYIDERAYTDIFLSSRCDLTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMIDNGDLQRIHDKWLLSSACLSQGAKLEVERLQLRSFWGLYAICGVACLLALFMYLIQILRQYQKHHSEEPESIDGQSLGSSSRSSRLKTFLSFADEKEETVKSRSKRRKMERISYRSTEGSTSISSNKEIASRRSEYASELL 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01712 959 MobiDBLite consensus disorder prediction 915 959 - -
Viun2g01712 959 Pfam Ligand-gated ion channel 832 864 IPR001320 GO:0015276|GO:0016020
Viun2g01712 959 FunFam Glutamate receptor 167 323 - -
Viun2g01712 959 SUPERFAMILY Periplasmic binding protein-like I 47 483 IPR028082 -
Viun2g01712 959 SMART GluR_14 492 833 IPR001320 GO:0015276|GO:0016020
Viun2g01712 959 CDD GluR_Plant 491 831 - -
Viun2g01712 959 FunFam Glutamate receptor 728 835 - -
Viun2g01712 959 Pfam Bacterial extracellular solute-binding proteins, family 3 546 831 IPR001638 -
Viun2g01712 959 Gene3D - 486 602 - -
Viun2g01712 959 MobiDBLite consensus disorder prediction 933 949 - -
Viun2g01712 959 Gene3D - 778 838 - -
Viun2g01712 959 FunFam Glutamate receptor 486 602 - -
Viun2g01712 959 Pfam Receptor family ligand binding region 69 429 IPR001828 -
Viun2g01712 959 CDD PBP1_GABAb_receptor_plant 52 448 IPR044440 -
Viun2g01712 959 Gene3D - 69 419 - -
Viun2g01712 959 Gene3D - 603 736 - -
Viun2g01712 959 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 51 903 IPR015683 -
Viun2g01712 959 FunFam Glutamate receptor 602 732 - -
Viun2g01712 959 Gene3D - 167 444 - -
Viun2g01712 959 PIRSF IGluLR_plant 19 957 IPR017103 -
Viun2g01712 959 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Viun2g01712 959 SUPERFAMILY Periplasmic binding protein-like II 468 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01712 Viun-Chr2 26665134 26669745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01712 24 931 Ion Channels AT3G51480 57.096 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01712 K05387 - gmx:100793320 1615.9