Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01694 ATGAGTGATGCAAAAGAACACGAAGAGGCTGCCCAGGGCGAGTCCTCGGTCGTGGAAGAGAACAAGGTGTTGGTTGATACAAAGGATCGAGTTCAGCCTGAAGCGGCCTCTACTCCTGCTCCAGTAGAGGAAGCGTCAAACCTTGTTGAAAATGGGTCAAATCATGTTGAAAGTGGGTCAAATCCTGCTGAAATTAAGAAGGAAGAGCCATCTGCTGAGCATAAAAATGTGGAACCTGAGGTTGTTTCAGAAGGAATTCCACAAGAAGATGTTAAAAATACTTTTCACTCTGTCCCAGTAGAGTCTCATATTCAGGTTTTGGATACGATTGAATGTGAAGAAGCGTCTAAAGCGAAGGGTGAAGCTGAAGAATTTCCCACAAGTGATAAGAAGGTTGAGAATTGTGATGATATTCGTCAGAATAGTATTGATAATGTTGGAATGGCTGTGGAAGTGAAGCCTGAAGGCTGTGGAGTGGTTGACAGTAAAAATTGTGACAATGGTGATCCAATGCCTGCAAGTCATAATGAGCCTCCTATATCACAACCTGCTCCTGCTGATACAAACACTGAGTTTGTGAATGTATTAGAAGTTGAGAATAAGGCTGATGAAAAGCAAGCTACCGATCCTGCTGATAATGGGAATTCAAACTCAAAGCACTTCTGTTTCTTGGATGCTGACCATTCCTACGATGGTAATGAGTCAGGAACAGAGGAGGAGCAGTCAGCATTCATGAAGGAGCTTGAAAACTTTTTTAGGGAGAGGAGCATGGAATTCAAACATCCCAAGTTTTATGGAGAAGGACTAAACTGCCTCAAGTTGTGGAGAGCTGTAACAAGATTGGGTGGCTATGATAAGGTGACTTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACCACTGTCTCATGGACTTTCCGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAAATAAAAGGTGGTGAGCTAAATGTGCCAATTTCTTCTCTCCCAGAGCCAGTAAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCACAGCGTCTCCTAGGGAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCCATGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTGCACAAACGTAAAAAGCCATCTTCACCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCTTCTAAACCACAATTGGACACAACTGTGATTGACATAGGACCTCCTGCTGACTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTTCGTGTACAGTCAGACCCAGCAGGACGCCTTGTCATAAGTGGTGAGCCTGAGCATCCCAACAATCCTTGGGGCGTGACACCTTTCAGAAAGGTGGTTAGCTTGCCCTCAAGAATTGATCCTCATCAGACATCGGCGGTGGTGACGCTGCATGGGCAGTTGTTTGTTCGTGTACCATTTGAACTGTCCGAATAG 1605 0.443 MSDAKEHEEAAQGESSVVEENKVLVDTKDRVQPEAASTPAPVEEASNLVENGSNHVESGSNPAEIKKEEPSAEHKNVEPEVVSEGIPQEDVKNTFHSVPVESHIQVLDTIECEEASKAKGEAEEFPTSDKKVENCDDIRQNSIDNVGMAVEVKPEGCGVVDSKNCDNGDPMPASHNEPPISQPAPADTNTEFVNVLEVENKADEKQATDPADNGNSNSKHFCFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKHPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPISSLPEPVNIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSMSVQKREKQLKSINLHKRKKPSSPYMDNAVKAARSKPSKPQLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFRKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFELSE 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01694 534 Pfam Hsp20/alpha crystallin family 451 530 IPR002068 -
Viun2g01694 534 Gene3D - 238 335 IPR036431 GO:0003677
Viun2g01694 534 SUPERFAMILY HSP20-like chaperones 443 529 IPR008978 -
Viun2g01694 534 SMART ARID_2 235 325 - -
Viun2g01694 534 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 434 534 IPR002068 -
Viun2g01694 534 SUPERFAMILY ARID-like 233 339 IPR036431 GO:0003677
Viun2g01694 534 MobiDBLite consensus disorder prediction 61 80 - -
Viun2g01694 534 MobiDBLite consensus disorder prediction 1 29 - -
Viun2g01694 534 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 11 531 IPR045147 GO:0006357
Viun2g01694 534 Pfam ARID/BRIGHT DNA binding domain 241 325 IPR001606 GO:0003677
Viun2g01694 534 FunFam AT-rich interactive domain-containing protein 3 238 337 - -
Viun2g01694 534 ProSiteProfiles ARID domain profile. 238 329 IPR001606 GO:0003677
Viun2g01694 534 Gene3D - 436 534 IPR008978 -
Viun2g01694 534 MobiDBLite consensus disorder prediction 1 90 - -
Viun2g01694 534 CDD ARID 240 325 - -
Viun2g01694 534 FunFam AT-rich interactive domain-containing protein 3 426 534 - -
Viun2g01694 534 MobiDBLite consensus disorder prediction 167 186 - -
Viun2g01694 534 SMART bright_3 239 330 IPR001606 GO:0003677
Viun2g01694 534 CDD ACD_sHsps-like 449 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01694 Viun-Chr2 26488239 26494974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01694 219 531 ARID Transcription Factor Family AT1G76510 62.579 1.83e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun2g01694 HSP20 5e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01694 - - gmx:100791081 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01694 2 26488239 26494974 Viun2g01694 2 26488239 26494974 ECH