LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun2g01685	ATGATTCCCCTCCAATGCAACAACATGGGTGGTTACTCCGCCGCCATCGCCGTCATCACCACCATCCTCTTCCTGTTCCCGCCGCCGACTTCCCAGGCCCAGATTCTCAAAACAGAAGCTCACGTTTTCGGTCCCTTCAACCAATCCTACTTCAACACGTTCCAGGTGTTGCCCAGCGCCGCCATCAACCTTGAAGCTCTCCAAGTAACACCAGACAGCACCGGCAACGTGTCCCTGACCAACCGCTCCGGCAGAATCTTCTACGGCACCCCCTTCACTCTCTGGAACGACCGAGATAGCCTCGACGGAAATCTCGTCTCTTTCAACACTTCCTTTCTGATAAACGTGTACCGTCCCAAAAACGAAACTCCCGGCGAGGGCATCACCTTCCTAATCGCGCCTTCTGCCTCCGGCCCCCCTCTTAACAGCTACGGCCAGTTTCTCGGCCTCACCAACGTCTCCAACGACGGCAACCGCACCAACCAAATCCTTGCCGTCGAACTTGACACCGTGAAGCAGGACTTCGACCCCGACGACAACCACCTCGGCCTGGACATTAACGGCGTGAGGTCCAACGTCACTGTGTCTCTCACTCCCTTGGGGTTCGAGATCGTGCCCAACGTCACGCGCTTCCACGTTCTGTGGGTGGAGTATGACGGTGGCCGGAAGGTGATCGACGTGTACATCGCGGTGCAGCCTGATAAGGATGCGCCCATAGTGCCGAAACCGGCTAAGCCGGTTCTGAGTTCAGCTCTCGATCTGAAACAAGTGGTGAACAGGGTTTCTTATTTTGGGTTCTCTGCTTCGACCGGTGACAACGTTGAACTGAACTGCGTGCTGAGGTGGAACATTTCTATTGAAGTTTTTCCCCAAAAAAATGGTATCGGAAATGCGTTGAAGATTGGGTTGGGTGTTGGAGTGCCTGTGGTGGTTCTTCTTCTAGCGGGTGTCGTAGGGTGGGTTTATTGGTTGAGGAGAAAACAGAGAGAAAGTGAGACTCAGATTCTGGGAACTCTCAAGAGTTTACCCGGAACTCCCAGAGAGTTTAGGTATCAAGAATTGAAGAAAGCCACTAATAATTTCGATGAGAAGCACAAGCTTGGACAAGGTGGATACGGCGTCGTGTACAGAGGAATACTTCCGAAGGAGAAGTTGGAAGTAGCCGTCAAAATGTTCTCCAGAGATAAGATGAAAAGCACCGATGATTTCTTGTCTGAACTCACCATCATCAATCGCCTTCGTCACAAAAACCTTGTTCGCTTACTGGGGTGGTGTCACAGAAATGGGGTGTTGCTGTTGGTGTACGATTACATGCCTAATGGAAGCTTGGACAACCACATTTTCTGTGAGGCAGGGAGCAACACTACACCACTAAGTTGGCCTTTGAGGTACAAGATCATAGCAGGGGTGGCTTCTGCATTGAACTACCTGCACAACGAGTATGATCAGAAAGTGGTTCACAGAGACCTTAAGGCCAGCAACATCATGCTGGACTCAGAGTTCAATGCTCGTTTAGGTGACTTTGGGTTGGCTCGTGCATTGGAGAATGATAAAACATCGTATGCAGAGTTGGAAGGAGTGCATGGCACCATGGGGTACATTGCACCTGAGTGCTTCCACACTGGGAGGGCCACAAGAGAATCTGATGTTTATGGGTTTGGAGCAGTGGTCCTTGAGGTGGTGTGTGGGCAAAGGCCATGGACCAAGAACGAGGGGTATGAGTGCTTGGTGGATTGGGTATGGCACCTGCATCGTGAGCAAAGGATACTTGATGCAGTGGATCCAAGACTTGGGAATGGTTGTGTGGCTGAAGAGGCAGAGAGGGTTCTGAAACTAGGACTAGCATGCTCTCACCCCATTGCCAGTGAAAGACCAAAGATGCAAACAATTGTTCAGATCATATCTGGTTCAGTGCCTGTGCCTCATGTTCCACCTTTCAAACCAGCTTTTGTGTGGCCAGCCATGGATCTATCAAGCCTTGCAAGTGACCTCACACAAACCACAACAACCGAGTACACACCCATGAACAGTACCACACATTCTACTCATGTTGATTTCTCAGATAGTGGCTCTCTTGTCTAA	2082	0.5082	MIPLQCNNMGGYSAAIAVITTILFLFPPPTSQAQILKTEAHVFGPFNQSYFNTFQVLPSAAINLEALQVTPDSTGNVSLTNRSGRIFYGTPFTLWNDRDSLDGNLVSFNTSFLINVYRPKNETPGEGITFLIAPSASGPPLNSYGQFLGLTNVSNDGNRTNQILAVELDTVKQDFDPDDNHLGLDINGVRSNVTVSLTPLGFEIVPNVTRFHVLWVEYDGGRKVIDVYIAVQPDKDAPIVPKPAKPVLSSALDLKQVVNRVSYFGFSASTGDNVELNCVLRWNISIEVFPQKNGIGNALKIGLGVGVPVVVLLLAGVVGWVYWLRRKQRESETQILGTLKSLPGTPREFRYQELKKATNNFDEKHKLGQGGYGVVYRGILPKEKLEVAVKMFSRDKMKSTDDFLSELTIINRLRHKNLVRLLGWCHRNGVLLLVYDYMPNGSLDNHIFCEAGSNTTPLSWPLRYKIIAGVASALNYLHNEYDQKVVHRDLKASNIMLDSEFNARLGDFGLARALENDKTSYAELEGVHGTMGYIAPECFHTGRATRESDVYGFGAVVLEVVCGQRPWTKNEGYECLVDWVWHLHREQRILDAVDPRLGNGCVAEEAERVLKLGLACSHPIASERPKMQTIVQIISGSVPVPHVPPFKPAFVWPAMDLSSLASDLTQTTTTEYTPMNSTTHSTHVDFSDSGSLV	693

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun2g01685	693	Gene3D	-	40	296	-	-
	Viun2g01685	693	FunFam	probable L-type lectin-domain containing receptor kinase S.5	346	437	-	-
	Viun2g01685	693	ProSiteProfiles	Protein kinase domain profile.	361	643	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g01685	693	SUPERFAMILY	Concanavalin A-like lectins/glucanases	50	292	IPR013320	-
	Viun2g01685	693	ProSitePatterns	Protein kinases ATP-binding region signature.	367	390	IPR017441	GO:0005524
	Viun2g01685	693	SMART	serkin_6	361	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g01685	693	PANTHER	-	72	644	-	-
	Viun2g01685	693	ProSitePatterns	Legume lectins beta-chain signature.	164	170	IPR019825	-
	Viun2g01685	693	CDD	STKc_IRAK	367	634	-	-
	Viun2g01685	693	FunFam	probable L-type lectin-domain containing receptor kinase S.5	438	639	-	-
	Viun2g01685	693	Pfam	Protein kinase domain	362	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g01685	693	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	485	497	IPR008271	GO:0004672\|GO:0006468
	Viun2g01685	693	Gene3D	Transferase(Phosphotransferase) domain 1	438	638	-	-
	Viun2g01685	693	MobiDBLite	consensus disorder prediction	671	693	-	-
	Viun2g01685	693	SUPERFAMILY	Protein kinase-like (PK-like)	343	667	IPR011009	-
	Viun2g01685	693	CDD	lectin_legume_LecRK_Arcelin_ConA	66	283	IPR001220	GO:0030246
	Viun2g01685	693	Pfam	Legume lectin domain	53	290	IPR001220	GO:0030246
	Viun2g01685	693	Gene3D	Phosphorylase Kinase; domain 1	346	437	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun2g01685	Viun-Chr2	26420291	26423561	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun2g01685	58	646	Receptor kinase-like Gene Family	AT3G53810	40.289	7.36e-130	397

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Viun2g01685		Pkinase	4.2e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun2g01685	-		-	gmx:100780014	1182.55