Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01642 ATGGTAATAGCAGAAGGAACAACTTGTATTTCTTCTATGATAACTTCTCAGTCTTGCAGTCTTCAATTCCTCATCAAAATGAAACATTTTTCTCTTCTGTTTCTTGGTTTTTGGGCTATATATGTTCAACTGTGCTATATCCCAACTGTAACAGCCTTTGCACCAGGAAATGAGACTGATCATTTGGCACTGCTGGAATTCAAGAAATCTATATCCGGAGACCCATATGGAATCTTACTTTCCTGGAACACTTCTACTCACTTCTGTAACTGGCCTGGAATAGCATGCAATCTCAAGCTTCAAAGAGTTACACAGTTAGTCTTGAATAGGTACAAGTTGGAAGGATCCATATCTCCCCACATAGGGAATCTCTCTTATATGATCAACTTCAATCTAGCAATCAACAACATCCACGGCAAAATACCCCAGCAACTGGGACGGTTGTCACTTCTGCAACAACTATCTGTTGGAAACAACTTATTGGTAGGAGAAATTCCTTCGAATTTGACTGCATGTAATGATCTCAGATTCTTATACTTGCAAAAGAATAATCTGACTGGAAAAATTCCAGTCGGAATTGGCTCACTTGAAAAGCTTGAAGTTTTGAGTTTTTCTCGTAACAGGTTTACAGGAGAAATCCCTTCATCCATAGGTAATCTTACATCCCTCACAACTCTCGATGTTGGTAGTAACATCTGTGAAGGACATATACCAGAAGAAATATGTCATCTCAGAAACTTGACGTTTGCATCATTTGGTGAAAACAAATTCACTGGAACATTTCCTTCTTGTCTTTATAATATGTCATCTCTTACCATGATCTCAGCTACACAAAATCAATTAAGTGGCTCTCTTCCATCGAACATGTTCCACACCCTCCCCAATCTCCAAGAACTTTACATTGGTGACAATCAAATCTCTGGTCGAATCCCACCTTCCATCACCAATGCATCCATATTCTTTTTAGCACTTGAGGCCAGTCGAAACAGTCTCACAGGACAAATTCCAAGCATGGGGAAGTTCCAATATCTTGATATCATATCTTTGTCTTGGAACCATCTAGGTAACAATTCAAATACTGATTTCGATTTTGTAGAATCATTGGCTAACAGTAGTAGGTTACAACAGTTGTCCATATCCTACAATAATTTTGGAGGTCATTTGCCAAATTCTTTGGGAAATTTATCCCCCCAACTTAGTGGATTATTTCTTGGAGGTAATCATATATCAGGGAAAATCCCTGCAACAATAGGAAATTTAACTAATTTAGCTCTTTTGACTATGGAAAACAACAGCCTTAGTGGGAATATCCCAATAACTTTTGGGAAGTTTCAAAAGCTAAGGGAGTTAAATTTGGGTGCAAACAAGCTGTCAGGAGAGTTAGGAGCCTACATAGGCAACTTTACTGAACTTTTTCATTTGGAATTAGAAGATAATCTGTTTGAAGGGAATATCCCTCCAAGTATAGGAAACTGCCAGAATCTACAGTACTTGGATCTTTCACATAACAACCTTACAGGAACCATACCCTTGGAGCTTTTTAAGCTTTCATCTCTAACCATCTTGTTGGATTTGTCACTAAACTCATTGAGTGGCACTATACCTGAAGAAGTACGCAGCCTAAAAAATCTTGGTTTGATAGATATGTCTGAGAATCACATGTCCGGGGAAATTCCTCCAACAATTGGGGAATGCATAATGTTGGAATATCTATATTTGCAAGGGAATTCTTTACAAGGAACCATACCATCTTCTTTGGCATCACTCAAAGGGCTTCAACGTTTAGACCTGTCACGAAATCAATTGTCTGGATCAATTCCTAATGATCTACAAAAAATTTCTTCCTTAAAATATTTCAATGTTTCCTTCAACACATTAGAGGGTGAAGTACCAACCAAAGGGGTCTTTGGAAATGCAAGAACTATACTGGTTATTGGAAACAATAAACTTTGTGGGGGAACTTCAGAACTGCATCTACCACCATGTGCTGTCAAAGGTAAGAAACTTGAAAAACACTACAAGTTCAAGTTGATAGCAGTGATAGTTAGTGTGATTGCTTTTCTTCTTATATTGTCAATTACTATAACTATTTACTGGACGAGGAAAAGGAGTAAGAAAGAACCTTTGGTTTCACCTTCAGAAACTGATCATCAGTTGGCTACAGTTTCGTTCCAAAGCCTACACAAGGCAACTGATGGATTCTCAGCTACAAACTTGATAGGGTCTGGAAATTTTAGCTCTGTTTACAAAGGAACTCTTGAGGAGTTAGAAGAGAAAGTTGTTGCCATAAAGGTCCTAGACCTTCAGAAAAAGGGTGCTCACAAGAGTTTTGTTTCAGAATGCAACGCACTCAGAAATATCAAACATCGAAATCTGATTCAGGTTTTGACATGCTGTTCCAGCATAGATTACAATGGTCAAGAATTCAAAGCTCTGATTTTTCCGTACATGACAAATGAAAGCTTGGAGCAATGGCTGCATCCTAAGACACCAAGTGCTGAGAATCCGAGAAAATTGAGCCTTGATCAAAGGTTAAATATCATGGTGGATGTTGCTTCTGCATTACATTATCTTCATCATGAAGGTGAGCAACCAATAATTCATTGTGATTTAAAGCCAAGTAATGTCCTCCTCGACAAAGAGATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAAACTTCTCTCAAACATCAATGATACCACTTCTGAACAAACAAGTACAATTGCAATAAAGGGAACTATTGGCTATGTTCCTCCAGAGTATGGAGTGAGCTCTGAAGTATCAACATACGGTGACATATACAGCTTTGGGATTCTAATGCTGGAAATGCTTACAGGAAAAGGTCCCACAGATGAAATGTTTGAAGATGGTCAAAATCTTCATAACTTTGTCACAGTTTCATTTCCTGATAATCTTTTGCAAATTCTGGATCCACTACTTGTTCCAACAGAGGAAGCACCACCATTGAAAGGAAACAATTGGAATCTTGATCCAAATGTTGAGATGTGCTTAGTTTCCCTTTTTAGGATTGGGCTTTCTTGTTCTATGAAATCACCAAAAGATAGAATGAAAATTGCTGATGTCACTAGGGAGCTTAACCGAATCAGTGAAGCCTTTCTTGTTGGTGTGGATACTCCAAAGTAG 3147 0.3826 MVIAEGTTCISSMITSQSCSLQFLIKMKHFSLLFLGFWAIYVQLCYIPTVTAFAPGNETDHLALLEFKKSISGDPYGILLSWNTSTHFCNWPGIACNLKLQRVTQLVLNRYKLEGSISPHIGNLSYMINFNLAINNIHGKIPQQLGRLSLLQQLSVGNNLLVGEIPSNLTACNDLRFLYLQKNNLTGKIPVGIGSLEKLEVLSFSRNRFTGEIPSSIGNLTSLTTLDVGSNICEGHIPEEICHLRNLTFASFGENKFTGTFPSCLYNMSSLTMISATQNQLSGSLPSNMFHTLPNLQELYIGDNQISGRIPPSITNASIFFLALEASRNSLTGQIPSMGKFQYLDIISLSWNHLGNNSNTDFDFVESLANSSRLQQLSISYNNFGGHLPNSLGNLSPQLSGLFLGGNHISGKIPATIGNLTNLALLTMENNSLSGNIPITFGKFQKLRELNLGANKLSGELGAYIGNFTELFHLELEDNLFEGNIPPSIGNCQNLQYLDLSHNNLTGTIPLELFKLSSLTILLDLSLNSLSGTIPEEVRSLKNLGLIDMSENHMSGEIPPTIGECIMLEYLYLQGNSLQGTIPSSLASLKGLQRLDLSRNQLSGSIPNDLQKISSLKYFNVSFNTLEGEVPTKGVFGNARTILVIGNNKLCGGTSELHLPPCAVKGKKLEKHYKFKLIAVIVSVIAFLLILSITITIYWTRKRSKKEPLVSPSETDHQLATVSFQSLHKATDGFSATNLIGSGNFSSVYKGTLEELEEKVVAIKVLDLQKKGAHKSFVSECNALRNIKHRNLIQVLTCCSSIDYNGQEFKALIFPYMTNESLEQWLHPKTPSAENPRKLSLDQRLNIMVDVASALHYLHHEGEQPIIHCDLKPSNVLLDKEMVAHVSDFGIAKLLSNINDTTSEQTSTIAIKGTIGYVPPEYGVSSEVSTYGDIYSFGILMLEMLTGKGPTDEMFEDGQNLHNFVTVSFPDNLLQILDPLLVPTEEAPPLKGNNWNLDPNVEMCLVSLFRIGLSCSMKSPKDRMKIADVTRELNRISEAFLVGVDTPK 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01642 1048 Gene3D Ribonuclease Inhibitor 359 669 IPR032675 -
Viun2g01642 1048 SUPERFAMILY Protein kinase-like (PK-like) 710 1033 IPR011009 -
Viun2g01642 1048 Pfam Leucine rich repeat 568 626 IPR001611 GO:0005515
Viun2g01642 1048 SMART LRR_sd22_2 444 470 - -
Viun2g01642 1048 SMART LRR_sd22_2 196 222 - -
Viun2g01642 1048 SMART LRR_sd22_2 148 171 - -
Viun2g01642 1048 SMART LRR_sd22_2 492 513 - -
Viun2g01642 1048 SMART LRR_sd22_2 293 319 - -
Viun2g01642 1048 SMART LRR_sd22_2 589 618 - -
Viun2g01642 1048 FunFam LRR receptor-like serine/threonine-protein kinase EFR 363 668 - -
Viun2g01642 1048 ProSitePatterns Serine/Threonine protein kinases active-site signature. 866 878 IPR008271 GO:0004672|GO:0006468
Viun2g01642 1048 ProSiteProfiles Protein kinase domain profile. 734 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01642 1048 Gene3D Ribonuclease Inhibitor 59 171 IPR032675 -
Viun2g01642 1048 Gene3D Transferase(Phosphotransferase) domain 1 817 1041 - -
Viun2g01642 1048 Pfam Protein kinase domain 737 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01642 1048 SUPERFAMILY L domain-like 368 652 - -
Viun2g01642 1048 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 445 1037 - -
Viun2g01642 1048 SMART LRR_typ_2 268 292 IPR003591 -
Viun2g01642 1048 SMART LRR_typ_2 589 612 IPR003591 -
Viun2g01642 1048 SMART LRR_typ_2 148 172 IPR003591 -
Viun2g01642 1048 SMART LRR_typ_2 196 220 IPR003591 -
Viun2g01642 1048 SMART LRR_typ_2 492 516 IPR003591 -
Viun2g01642 1048 SMART LRR_typ_2 293 317 IPR003591 -
Viun2g01642 1048 SMART LRR_typ_2 541 565 IPR003591 -
Viun2g01642 1048 FunFam LRR receptor-like serine/threonine-protein kinase EFR 705 816 - -
Viun2g01642 1048 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 97 362 - -
Viun2g01642 1048 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 817 1044 - -
Viun2g01642 1048 ProSiteProfiles Leucine-rich repeat profile. 494 515 IPR001611 GO:0005515
Viun2g01642 1048 Gene3D Ribonuclease Inhibitor 245 358 IPR032675 -
Viun2g01642 1048 Gene3D Ribonuclease Inhibitor 172 244 IPR032675 -
Viun2g01642 1048 SUPERFAMILY L domain-like 57 354 - -
Viun2g01642 1048 Pfam Leucine Rich Repeat 295 315 IPR001611 GO:0005515
Viun2g01642 1048 PRINTS Leucine-rich repeat signature 495 508 - -
Viun2g01642 1048 PRINTS Leucine-rich repeat signature 589 602 - -
Viun2g01642 1048 Pfam Leucine rich repeat N-terminal domain 58 97 IPR013210 -
Viun2g01642 1048 ProSitePatterns Protein kinases ATP-binding region signature. 740 764 IPR017441 GO:0005524
Viun2g01642 1048 Pfam Leucine Rich repeat 491 507 IPR001611 GO:0005515
Viun2g01642 1048 Gene3D Phosphorylase Kinase; domain 1 695 816 - -
Viun2g01642 1048 SMART serkin_6 734 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01642 Viun-Chr2 26097114 26100860 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01642 57 1041 Receptor kinase-like Gene Family AT3G47570 43.964 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun2g01642 Pkinase 3.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01642 - - gmx:102664380 1497.64