Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01638 ATGAACACTTTTTCTCTCCTGTTTCCTTCGTTTTGTTCTGTAGCATGTCTTCCCATGCTTGTCTTCTTTATTATCAACTCTCTCTTGTGTATCCCAACCACAACTGCCTCTATATTAGGAAACCAGACCGACCATTTGGTGCTGCTCAAATTTAAGGAATCAATATCAAACGACCCTTACAAAATCATTGCCTCTTGGAACAGTTCCATTCATTTTTGCAAGTGGCCTGGAGTTACATGTGATTCCATGAATCAAAGAGTTGTAGAGTTAAACCTAGAAGGAAAACAGTTGCATGGTTTCATACCACCCCATATAGGCAATCTCTCTTTCCTAACCAGGCTTAACCTCGGAAACAACAGCTTTTGTGGAAAAATTCCACAAGAACTTGGTCGGTTGTTACAGTTACAAAACCTATCTCTCACCAACAACTCTTTGAAAGGAGAAATACCTGCAAACTTGACAAGATGTTCTAACCTTAGAGAGTTACACTTGTTTGGTAACAATTTGGTTGGTGAAATCCCAATGGAAATTGGCTGCCTGCAAAAGCTTCAAGAACTGACCTTGGCAGTAAACAATCTCACAGGAGCAATCCCATCTTCCATAGGGAACCTTTCATCTCTCGTTTCTCTCTCAATCGGTGTCAATTACTTCGAGGGAAATATCCCACGAGAAATTTGTCTGCTCAGAAACTTGTCATTGATGTCATTGCATGTCAACAAGCTGATAGGTACATTTCCTTCTTGTCTCTACAATATGTCATCTCTTACCATTATTTCAGCTGCAGACAATCAATTTAATGGCTCCCTTCCACCAAACATGTTCCACACTCTCCCTAATCTCCGAGAGTTCCTTGTTGGTGGGAATCATATCTCAGGTTCAATCCCAACTTCCATTGCAAATGCATCTTTCCTTCAAACACTTGATGTTGGTACAAATCATTTAGAGGGCCAAGTTCCAAGTCTTGGAAAGCTGCAATACCTTTGGTTCCTTAGTCTGTATAGCAACAACTTAGGTGAGAATACGACAAAGGACTTGGAGTTTTTAAAATCCTTAGCCAATTGTAGCAAGTTGGAAGTGGTTTCTATTTCCTATAACAGTTTCGGAGGTAGTTTGCCAAATTTTATGGGAAATTTATCCACCAAACTTAGTCAATTATATCTTGGGGGTAATCACATATCAGGAAAAATTCCTGCAGAATTAGGCAATCTGGTTAGCTTAACTATCTTGACCATGGAAATTAACCACTTTGAAGGGGTTATTCCAGCCACTTTTGGGAAGTTTCAGAAGTTACAGAAGTTGGAGTTGAGTAGAAACAAGTTGACAGGAGATATTCCAGATTTCATAGGCAACCTCACTCAGTTGTATTATTTGGGCATGGCAGAAAATATGTTAGAAGGAAAGATTCCTCCAAATATTGGAAAATGTCAAAATTTACAATACCTTAACCTTTGGAAAAACAACCTTATAGGAAGCATACCCTTAGAGGTTTTCAGTCTTTTCTCGTTAACTAACTTACTGGACTTGTCACAAAATTCACTGAGTGGTAAGCTTCCTGATGAAATTGGCCGGTTAAAAAATATTGGGAAGATGAGTGTGGCTGATAATAATCTGTCTGGTGAAATTCCTGAAACCATTGGAGACTGCATAAGCTTGGAGTACCTTTGTCTGCAAGGAAATTCCTTTCATGGAATCATACCTTCCTCTTTGGCTTCACTCAAAGGTCTTCGAGTATTAGACATGTCACGAAATCTTCTCAGTGGATCAATTCCTAAGGATCTACAAAATATTTCTTTCTTAGAATACTTCAATGTATCTTTTAACATGTTGGAGGGTGAAGTACCATTTGAAGGTGTCTTTCAAAATGCAAGTGAGTTAGCCTTGACTGGGAACAATAAACTTTGTGGCGGTGTTTCACAGTTGCATCTACCACCGTGTCCTATAAAAGGTAAGAAACCTGCAAAACACTTGAATTTTCTATGGATCGCAATGGTGGTAGTTAGTGCAGTTGTTTTTCTTCTCGTTCTGCCATTTTTTGTATCTATCTACCGGTTGAGGATAAGAAACCACAAAAATCCATCGTCTGATTTGCCAATTATAGACCAAGTGGATAAGGTTTCATACCAAAACCTACACCAAGGAACCGATGGGTTTTCGGTTAAAAATTTGATAGGATCTGGAAGTTTTGGCTCCGTATACAAAGGGACTATTGAGTTAGAAGGAGAAGAAAATGTTGTAGCCATAAAGGTTGTAAACCTTCAACAGAAGGGAGCTCAAAAGAGTTTCATTGCCGAATGTAATGCCTTGAAAAATATCAGGCATCGAAACTTGGTCAAAACTGTAACATGTTGTTCTAGCATAGATCACAGAGGCCAAGAATTCAAAGCTCTTGTTTTTGAGTACATGATAAATGGAAGCCTAGAAAGCTGGTTGCATCCAGAAGTAGAAACTTCAAAGGAGCCTGCAAGATCATTAAACATTGACCAAAGATTAAACATTATCATTGATGTTGCTTCTGCTATTCACTATCTTCACTACGAATGTGGGCAAGCCATTATTCACTGTGATTTGAAGCCAAACAATGTTCTTCTCGATGATTGTTTGGTAGCTCATGTAAGCGACTTTGGTTTAGCCAGAAGACTCACAACAACTATTGCAGTTTCTCCAAAACAAACTAGCACTATTGAAATAAAGGGCACAATTGGTTATGCTCCTCCAGAATATGGAATGGGATCAGAGGTGTCTACAGAAGGCGACGTGTACAGCTTTGGAATTCTTGTTTTGGAAATGTTAACTGGGAGAAGACCAATAGATGAAATGTTTGAAGATGGTCTTAATCTTCATAACTATGTCAAAATTTCAATTCCAAACCACCTTCCACAGATTGTGGACCCAATTATTCTTCCAAAGGGAATAAAGGTGGTTGCTAATGGCCAAAATCTTCCTTCAATGCATCCTTTGGTAGAGAAATGCTTACTGTCACTTTTTAGGATTGCACTTGCTTGTTCAAAGGAGTTGCCAAAAGAAAGAATGAGTATGGTTGATGTCATTAGGGAGCTCCATTTGATCAAAACTTCATTTTCTTCATGA 3087 0.3874 MNTFSLLFPSFCSVACLPMLVFFIINSLLCIPTTTASILGNQTDHLVLLKFKESISNDPYKIIASWNSSIHFCKWPGVTCDSMNQRVVELNLEGKQLHGFIPPHIGNLSFLTRLNLGNNSFCGKIPQELGRLLQLQNLSLTNNSLKGEIPANLTRCSNLRELHLFGNNLVGEIPMEIGCLQKLQELTLAVNNLTGAIPSSIGNLSSLVSLSIGVNYFEGNIPREICLLRNLSLMSLHVNKLIGTFPSCLYNMSSLTIISAADNQFNGSLPPNMFHTLPNLREFLVGGNHISGSIPTSIANASFLQTLDVGTNHLEGQVPSLGKLQYLWFLSLYSNNLGENTTKDLEFLKSLANCSKLEVVSISYNSFGGSLPNFMGNLSTKLSQLYLGGNHISGKIPAELGNLVSLTILTMEINHFEGVIPATFGKFQKLQKLELSRNKLTGDIPDFIGNLTQLYYLGMAENMLEGKIPPNIGKCQNLQYLNLWKNNLIGSIPLEVFSLFSLTNLLDLSQNSLSGKLPDEIGRLKNIGKMSVADNNLSGEIPETIGDCISLEYLCLQGNSFHGIIPSSLASLKGLRVLDMSRNLLSGSIPKDLQNISFLEYFNVSFNMLEGEVPFEGVFQNASELALTGNNKLCGGVSQLHLPPCPIKGKKPAKHLNFLWIAMVVVSAVVFLLVLPFFVSIYRLRIRNHKNPSSDLPIIDQVDKVSYQNLHQGTDGFSVKNLIGSGSFGSVYKGTIELEGEENVVAIKVVNLQQKGAQKSFIAECNALKNIRHRNLVKTVTCCSSIDHRGQEFKALVFEYMINGSLESWLHPEVETSKEPARSLNIDQRLNIIIDVASAIHYLHYECGQAIIHCDLKPNNVLLDDCLVAHVSDFGLARRLTTTIAVSPKQTSTIEIKGTIGYAPPEYGMGSEVSTEGDVYSFGILVLEMLTGRRPIDEMFEDGLNLHNYVKISIPNHLPQIVDPIILPKGIKVVANGQNLPSMHPLVEKCLLSLFRIALACSKELPKERMSMVDVIRELHLIKTSFSS 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01638 1028 ProSiteProfiles Protein kinase domain profile. 717 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01638 1028 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 349 1020 - -
Viun2g01638 1028 FunFam LRR receptor-like serine/threonine-protein kinase EFR 688 800 - -
Viun2g01638 1028 ProSitePatterns Protein kinases ATP-binding region signature. 723 748 IPR017441 GO:0005524
Viun2g01638 1028 Gene3D Ribonuclease Inhibitor 44 154 IPR032675 -
Viun2g01638 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 851 863 IPR008271 GO:0004672|GO:0006468
Viun2g01638 1028 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Viun2g01638 1028 Gene3D Ribonuclease Inhibitor 266 343 IPR032675 -
Viun2g01638 1028 SMART serkin_6 717 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01638 1028 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 801 1028 - -
Viun2g01638 1028 Gene3D Transferase(Phosphotransferase) domain 1 801 1027 - -
Viun2g01638 1028 SUPERFAMILY L domain-like 381 635 - -
Viun2g01638 1028 Gene3D Ribonuclease Inhibitor 344 653 IPR032675 -
Viun2g01638 1028 FunFam LRR receptor-like serine/threonine-protein kinase EFR 347 651 - -
Viun2g01638 1028 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Viun2g01638 1028 Pfam Leucine rich repeat 405 464 IPR001611 GO:0005515
Viun2g01638 1028 Gene3D Ribonuclease Inhibitor 155 265 IPR032675 -
Viun2g01638 1028 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 81 346 - -
Viun2g01638 1028 SUPERFAMILY Protein kinase-like (PK-like) 689 1022 IPR011009 -
Viun2g01638 1028 SUPERFAMILY L domain-like 42 337 - -
Viun2g01638 1028 Gene3D Phosphorylase Kinase; domain 1 698 800 - -
Viun2g01638 1028 Pfam Protein tyrosine and serine/threonine kinase 719 954 IPR001245 GO:0004672|GO:0006468
Viun2g01638 1028 SMART LRR_typ_2 499 524 IPR003591 -
Viun2g01638 1028 SMART LRR_typ_2 572 595 IPR003591 -
Viun2g01638 1028 SMART LRR_typ_2 427 451 IPR003591 -
Viun2g01638 1028 SMART LRR_typ_2 132 156 IPR003591 -
Viun2g01638 1028 SMART LRR_typ_2 277 305 IPR003591 -
Viun2g01638 1028 SMART LRR_typ_2 403 426 IPR003591 -
Viun2g01638 1028 SMART LRR_typ_2 180 204 IPR003591 -
Viun2g01638 1028 SMART LRR_typ_2 252 276 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01638 Viun-Chr2 26065537 26068937 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01638 41 1026 Receptor kinase-like Gene Family AT3G47570 46.084 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun2g01638 PK_Tyr_Ser-Thr 2.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01638 - - gmx:100786600 1635.93