LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun2g01631	ATGAAGAGCATAAACGACGACGGTTCCACGCAAGATCTCGACCCTCAGAGCGACCACAGTTCCGATTACTTAGCTCACCCAAACTCTAACCCCCAACCTCACCCTCACCCGCGCCGTCCGCGGGGTTTCGCGGCGGCGGCGGCGGCGACTACCAATTCCGTCGCCAAGGGAAAGAAGGAGAGAGAGAAGGAGAAGGAGCGAACCAAGCTCCGGGAGCGACACCGCCGGGCCATCACCAGTCGCATGCTCGCCGGCCTCCGGCAGTACGGCAATTTCCCTTTGCCCGCGCGCGCAGACATGAACGACGTACTCGCGGCGCTCGCGCGTGAGGCTGGTTGGGTTGTTGACGCCGATGGAACCACCTATCGCCAGTGTCCCCCTCCCTCTCACATGGGGTCATTTGCGGCTAAATCAGTTGAAAGTCAACTCTCTGGTGGTTCTTTGAGGAATTGTTCTGTTAAGGAAACGATTGAGAATCAGACATCTGTGCTTAGAATTGATGAATGCTTGTCACCTGCATCCATTGATTCTGTTGTAATTGCAGAAAGGGACTCAAAGAACGAGAAATATACAAATGCGAGCCCCATCAATACTGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTTCACGAAAATGATTTTACTGGCACACCATATGTTCCTGTCTATGTAAAGCTTCCAGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATTAGGCAGGAGCTAATGCATATGAAGTCTTTAAATGTAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCACAGAAATATGTGTGGTCTGGCTATAGGGAGCTGTTTAACATCGTTAGAAAATTCAAACTTAAGTTGCAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGATATATTCTTCACAGATCGTGAAGGACGGAGGAATACTGAATGCCTTTCTTGGGGGATTGACAAAGAACGAGTTCTCAAAGGAAGAACTGGAATTGAGGTCTATTTCGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCTGTTGAAGTTGGACTTGGAGCATCCGGAGAGCTGAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTGCGGAGAGCAGCAAAATTACGTGGTCATTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACATTACAATTCTATGCCGCATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGACAATTACTATGGACGATTCTTCTTACATTGGTACTCCCAGACATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAACCCTTGCTTTCGAGGAGACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTACAAGACTCCAAGTCATGCAGCAGAGTTGACAGCAGGATATCACAACCCAACAAATCAGGATGGGTACTCTCCTGTGTTTGAGGTTCTAAGAAAACATGCTGTCACCATGAAGTTCGTCTGCTTAGGGTTTCATCTTTCCAGCCAGGAAGCTAACGAATCATTGATTGATCCTGAGGGTCTGAGTTGGCAGGTAATGCTTTCTATGTTCTTAACCTTTGCAAGTATAATTTTTCTGATGACAAGTTTTGTAGTTACCTGCGTGAAGGCAGGAATCTTACTGATTTAG	1833	0.4615	MKSINDDGSTQDLDPQSDHSSDYLAHPNSNPQPHPHPRRPRGFAAAAAATTNSVAKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSHMGSFAAKSVESQLSGGSLRNCSVKETIENQTSVLRIDECLSPASIDSVVIAERDSKNEKYTNASPINTVDCLEADQLMQDIHSGVHENDFTGTPYVPVYVKLPAGIINKFCQLIDPEGIRQELMHMKSLNVDGVVVDCWWGIVEGWSPQKYVWSGYRELFNIVRKFKLKLQVVMAFHECGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEVGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEVLRKHAVTMKFVCLGFHLSSQEANESLIDPEGLSWQVMLSMFLTFASIIFLMTSFVVTCVKAGILLI	610

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun2g01631	610	MobiDBLite	consensus disorder prediction	1	69	-	-
	Viun2g01631	610	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	303	324	IPR001554	GO:0000272\|GO:0016161
	Viun2g01631	610	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	538	561	IPR001554	GO:0000272\|GO:0016161
	Viun2g01631	610	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	281	299	IPR001554	GO:0000272\|GO:0016161
	Viun2g01631	610	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	396	418	IPR001554	GO:0000272\|GO:0016161
	Viun2g01631	610	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	469	488	IPR001554	GO:0000272\|GO:0016161
	Viun2g01631	610	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	260	274	IPR001554	GO:0000272\|GO:0016161
	Viun2g01631	610	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	520	531	IPR001554	GO:0000272\|GO:0016161
	Viun2g01631	610	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	503	519	IPR001554	GO:0000272\|GO:0016161
	Viun2g01631	610	MobiDBLite	consensus disorder prediction	55	69	-	-
	Viun2g01631	610	Pfam	BES1/BZR1 plant transcription factor, N-terminal	56	202	IPR008540	-
	Viun2g01631	610	SUPERFAMILY	(Trans)glycosidases	220	582	IPR017853	-
	Viun2g01631	610	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	159	582	IPR001554	GO:0000272\|GO:0016161
	Viun2g01631	610	MobiDBLite	consensus disorder prediction	1	28	-	-
	Viun2g01631	610	Gene3D	Glycosidases	216	584	-	-
	Viun2g01631	610	Pfam	Glycosyl hydrolase family 14	244	580	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun2g01631	Viun-Chr2	26045969	26051955	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun2g01631	14	581	Glycoside Hydrolase	AT5G45300	67.953	0.0	801

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BES1	Viun2g01631		Glyco_hydro_14	1.5e-79	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun2g01631	K01177		-	gmx:100777004	1098.96