Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01629 ATGGGGTCCAGTGGCAGCAAAGCCAGGTCATCGTCGTCGTCTTCGGGGAGTTTCAGGAAGGGTCGATCTAAGGGGCACAGAGGTTTCCCATCTTATTGTCTGGGAACGTCGTCTGGATCTCGTGACATTGATAGTGACGACCAGGTTTGTGATCAGAATAAAGTAAATGGAGATGATGTGACATACACCAGTGGCAATGAAATAGACTCAGATGAAGGGAAGACAGAGTCTTTTAGAAAGGTGAAACCTGGTAAATCTGATGAAGTGCCTTCTAACGTTGACCTTGAAGAGTGGCGTCACAGTGCATCCAGAACTGGTAGCAGCTCTGCACATTCTTCTTCAAACCACTCCTTGAACCCCTCAAGTCGGTTCCTGTCTCGCTTTAGCCTTGTTCCTGGTAATATAAGCTTTAGACTTAGCAGAACCACAAGTTTGGGGTCATCTAGGCCTTGCCCTGTTTCTTCAACAAATCTCTCAATATTTAATGATGAAGATGAGCTTAGTCTGCATCCAAGGCCACCTGGCAGCTTGATTACTAGAAATGAAACTCAGCACCGTAATGATTTGCTCAATGCATCTTTTGTTAGTCAAGTGCCTATGCAGTGTCATGAAGAAGCTTCTAATAATTTGCGTCCTAATGCCCCAGCATTGGTTTCACCTGGTAATTTGGCTAGTAATCGCCCAGTTTCTTCTGTCCAGGATGTGGGTAGAGATGGAAATGGTGCAAGAGAAGTGCCTGATGTCAACATCTTTTCTCCAAGAATTCATACTGATACAGAAAATATTGAGACTAGACATACTGATAGGCGAAATGGAGCTCGAGAACCTGTTGAACGTAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTCCGTGACAGAGTTCTCCGCCGATCAACATTGTCAGACTTCACCTTTTGCCCTATGCAACGAGAGAGAGAAGTAAGAGATGCTGGCCAAGAGAATGGAAGACGAGTAGGGGATAGAGAAGCAAGAGTGTCACCAACTGGTCGTAATGCTTCAAATTCTTCTACACCTAGATATCCTTTACCAAGTACACCTAGCTCCTTGTTTGGCATCCAAGACTATGAAGTTGAGACTTCACGTTCTAGAGAAACTAGGTATCAGGATCTGCTGGAACATAGGTCCAATTTCCTGGAACGGAGAAGGAGAATTCGGTCCCAGGTCCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACATAGAAACGGTCGTTGTGCATGCAGAACAAATACTCGGGATACCAATTCAAATGATGATACCAATGCTAGAGCCAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAACAATCTGTGGTTTTATCTTCTCGTCCTTCTGTGTCATCTATCGGTTCCATTCCTGCACCTAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGTTATATATGCCTTGTGGAGTATGAAGATGGAGACAGCATGAGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGAAGGAGATTCATAGGGTGTGCCCGCTATGTCGAGGGGATATCTGCGTATCTGATTCACTGCCAAGGGAGAACTAA 1686 0.4419 MGSSGSKARSSSSSSGSFRKGRSKGHRGFPSYCLGTSSGSRDIDSDDQVCDQNKVNGDDVTYTSGNEIDSDEGKTESFRKVKPGKSDEVPSNVDLEEWRHSASRTGSSSAHSSSNHSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSTNLSIFNDEDELSLHPRPPGSLITRNETQHRNDLLNASFVSQVPMQCHEEASNNLRPNAPALVSPGNLASNRPVSSVQDVGRDGNGAREVPDVNIFSPRIHTDTENIETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDFTFCPMQREREVRDAGQENGRRVGDREARVSPTGRNASNSSTPRYPLPSTPSSLFGIQDYEVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRTNTRDTNSNDDTNARASISRIVMLAEALFEQSVVLSSRPSVSSIGSIPAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICVSDSLPREN 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01629 561 FunFam Putative RING zinc finger domain superfamily protein 475 553 - -
Viun2g01629 561 SMART ring_2 506 547 IPR001841 -
Viun2g01629 561 MobiDBLite consensus disorder prediction 54 68 - -
Viun2g01629 561 MobiDBLite consensus disorder prediction 315 333 - -
Viun2g01629 561 Pfam Ring finger domain 505 548 IPR001841 -
Viun2g01629 561 MobiDBLite consensus disorder prediction 1 19 - -
Viun2g01629 561 MobiDBLite consensus disorder prediction 102 121 - -
Viun2g01629 561 MobiDBLite consensus disorder prediction 336 357 - -
Viun2g01629 561 MobiDBLite consensus disorder prediction 220 246 - -
Viun2g01629 561 MobiDBLite consensus disorder prediction 69 101 - -
Viun2g01629 561 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 560 - -
Viun2g01629 561 MobiDBLite consensus disorder prediction 315 357 - -
Viun2g01629 561 ProSiteProfiles Zinc finger RING-type profile. 506 548 IPR001841 -
Viun2g01629 561 MobiDBLite consensus disorder prediction 1 121 - -
Viun2g01629 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 553 IPR013083 -
Viun2g01629 561 SUPERFAMILY RING/U-box 484 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01629 Viun-Chr2 26039175 26044244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01629 232 555 C3H Transcription Factor Family AT5G45290 59.882 1.88e-111 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01629 - - gmx:100815830 920.998