Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01622 ATGAACTATTTTTCTCATTTCTTACTTTCATTACATGTCTATCTGTTTTCTCTCTTTGCGTTAAACTCAGTAGTACCATTTACCCCAAACATTATTGCTTATGCATTACCAAATAATTCTGATCATTTCTCACTACTTAAGTTCAAAGAAGCCATATCCACGGACCCCTTTGGAATCTTACTCTCATGGAATACTTCTATTCACTTTTGTCACTGGTATGGAATCACATGCAATTCCAAGCTTCAAAGAGTTACAGAGTTGAATTTAGAAGGACACCAATTGAAGGGATTCTTATCTCCTCACATTGGAAATCTCTCATACATGACAAACTTCAGCATCATGAACAACAACTTCTATGGGGAAATCCCACAAGAAGTTGGACGATTGTCACAACTGCAGAAACTCTATCTGGGAAATAACTCATTTGTAGGAGAAATCCCTACAAACTTGACAGGTTGCGCTCATCTCACAATCTTATACTTGTTTGGAAACAATTTGATTGGCAAAATACCAATCCAAATTGGCTCACTTCAAAAACTTCAAAGTTTAAATGTTGGGAAGAACAGGTTAACAGGAGGAATCTCACCATTCATAGGGAATGTTTCATCCCTGATTTATCTCTCCGTCATTATTAACAATTTAGAAGGAGATATTCCTCTACAGATATGCAGTCTCAAAAGCTTGGCATTTGTATATGTGAGTCTCAACAACTTGGCTGGACCATTTCCTTATTGTCTCTACAATATGTCTTGTCTCACTGAAATTGACGCATCAATAAATCAATTCAATGGCTCTCTTCCTCCCAGTATGTTCCACACTCTACCTAATCTCCGGACATTTACAATTGGTGGCAATGAAGTTTCAGGTCCAATTCCGGTTTCCATCACTAATGCATCTATGCTTTCAAGGCTTCAGATCTCTAGAAACTATTTCACCGGACAAGTTCCCAGTTTGGGGAAGCTACAATATCTATCTTTCCTTTCTTTGGAAAAAAACAATTTAGGTAACAATTCAATTAACGATTTAGAATTTTTAAAATCCTTGACAAACTGCAGTAAGTTGCAGATTTTGGGTCTGTCTGCCAATAATTTTGGAGGTCATTTGCCAAATTCCATGGGTAATTTATCCACCCAACTCACTCAACTATATCTAGGAGGCAATCGCATATCAGGAGAAATTCCTGCATCCTTAGGAAATTTAATTGGCTTAAATCTCTTGATGATAGAACAAAACAGCATTAGTGGAATTATCCCAACAACTTTTGGGAAGTTTCAGAAAATGCAAAAGTTGACGTTGGGTTCAAACTATCTGTCAGGGCAAATAGGAGCCTTCATAGGCAACCTCAGTCAATTGTTTTTTCTAGGTTTGGAGAAAAATATGTTACAAGGAAATATTCCTCCGAATATAGGAAACTGTCAAAAGTTACAAGAATTGGATCTATATCAAAACAACCTCACAGGAACCATACCCATTGAGATTTTCAATCTGTCATCTCTAACAAACTTTCTTGATTTGACAGAAAACTCTTTGAGTGGTAGCATACCAGCAGAAGTGGGCAACCTAAAACACGTCGATTTTCTATCTCTGTCTAACAACTATTTGTCTGGTCACATTCCTAGCACTATCGGGGAATGCATAATGTTGGAGTACCTCTATTTGGAAGGAAATTCCTTACAAGGAATCATACCATCTTCTTTGGCATCACTGAAAAGCCTTCGAGTTTTAGACATGTCACAAAACCACTTGTCCGGATCAATTCCTAACTCTCTGCAGAACATTCATTTCTTAGAATATTTCAATGTATCTTTTAATATGTTGGACGGTGAGATACCAACTGAAGGTGTCTTTCGAAATGCAAGTGCATTAGGTGTAGCTGGAAATAGTAAGCTCTGTGGAGGTATTTCAGAACTGCATCTACCACCATGTCCTGTCAAAGCTAAGAAACTTGAGAAACACCACATGTTTAGGTTGTATGCAATCATAGTTAGTGCAGTTGTTTTTCTTCTCATACTGTCAGTTATGTTAACAATCTGCCGGATGAGGAAAGGAAATAAGAAACCATCGCTGGATTCACCGAGAATTGACCAACTAGCTAAAGTTTCATACCAAAGTTTGCACAACGGAACTAATGGTTTCTCAACTACAAACTTGATAGGATCTGGGAATTTTAGCACTGTCTACAGAGGAACTCTTGATTTAGAAGACAAAGTCGTTGCCATAAAGGTCCTAAACCTTCAAAGAAAAGGAGCTCACAAGAGTTTCATTGTTGAATGCAATGCACTTAAAAATGTTAGGCATCGAAATCTTGTTAAGATTTTGACATGTTGTTCTAGCACAGATTACAAAGGTCAAGACTTTAAAGCTCTAGTTTTTGAGTACATGAGAAATGGAAGCTTGGAGCAATGGCTGCATCCTAGAACATTAAATACAGAGCATTCAAGAACATTGAGCCTTGATCAAAGATTAAATATCATGATTGATATTGCTTCTGCATTACATTATCTTCATCATGAATATGAGCAATCAATCATTCACTGTGACTTGAAGCCTAGCAATGTCTTGCTTGATGATGACATGGTTGCTCATGTTGGTGATTTTGGAATAGCAAGACTTCTAAACATTAATAGCACCACTTCTAAGCAAGCAACTTCAACTGGAATAAAAGGGACGGTTGGCTATGCTCCCCCAGAGTATGGAGTGGGTTCTGAGGTGTCTACGCACGGGGACATGTACAGCTTTGGAATTCTTATGTTGGAAATGTTTACAGGAAGGAGACCCACAGATGAAACTTTTGAGGGTGGTCAAAATTTGCATACTTTTGTGAAAAATTCATTTCCTAATAATGTTTTGCAGATTTTGGACCCGTCACTTGTAGCAAAACCAGAACAAGCAACAATAGAAGAAGAAAACACTCAGAACCTTACTACAACCATTGAAAAGCACTTCATTTCAGTCATTAGAATTGGACTTGCTTGTTCACTAGAGTCCCCAAACGAAAGAATGAATATAGTGGATGTCACTAGAGAGCTAAATAAAATCAAGAGACTCTTTCTATCTGGTGTCAACACTTGA 3072 0.3757 MNYFSHFLLSLHVYLFSLFALNSVVPFTPNIIAYALPNNSDHFSLLKFKEAISTDPFGILLSWNTSIHFCHWYGITCNSKLQRVTELNLEGHQLKGFLSPHIGNLSYMTNFSIMNNNFYGEIPQEVGRLSQLQKLYLGNNSFVGEIPTNLTGCAHLTILYLFGNNLIGKIPIQIGSLQKLQSLNVGKNRLTGGISPFIGNVSSLIYLSVIINNLEGDIPLQICSLKSLAFVYVSLNNLAGPFPYCLYNMSCLTEIDASINQFNGSLPPSMFHTLPNLRTFTIGGNEVSGPIPVSITNASMLSRLQISRNYFTGQVPSLGKLQYLSFLSLEKNNLGNNSINDLEFLKSLTNCSKLQILGLSANNFGGHLPNSMGNLSTQLTQLYLGGNRISGEIPASLGNLIGLNLLMIEQNSISGIIPTTFGKFQKMQKLTLGSNYLSGQIGAFIGNLSQLFFLGLEKNMLQGNIPPNIGNCQKLQELDLYQNNLTGTIPIEIFNLSSLTNFLDLTENSLSGSIPAEVGNLKHVDFLSLSNNYLSGHIPSTIGECIMLEYLYLEGNSLQGIIPSSLASLKSLRVLDMSQNHLSGSIPNSLQNIHFLEYFNVSFNMLDGEIPTEGVFRNASALGVAGNSKLCGGISELHLPPCPVKAKKLEKHHMFRLYAIIVSAVVFLLILSVMLTICRMRKGNKKPSLDSPRIDQLAKVSYQSLHNGTNGFSTTNLIGSGNFSTVYRGTLDLEDKVVAIKVLNLQRKGAHKSFIVECNALKNVRHRNLVKILTCCSSTDYKGQDFKALVFEYMRNGSLEQWLHPRTLNTEHSRTLSLDQRLNIMIDIASALHYLHHEYEQSIIHCDLKPSNVLLDDDMVAHVGDFGIARLLNINSTTSKQATSTGIKGTVGYAPPEYGVGSEVSTHGDMYSFGILMLEMFTGRRPTDETFEGGQNLHTFVKNSFPNNVLQILDPSLVAKPEQATIEEENTQNLTTTIEKHFISVIRIGLACSLESPNERMNIVDVTRELNKIKRLFLSGVNT 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01622 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Viun2g01622 1023 ProSiteProfiles Protein kinase domain profile. 712 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01622 1023 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Viun2g01622 1023 ProSitePatterns Protein kinases ATP-binding region signature. 718 741 IPR017441 GO:0005524
Viun2g01622 1023 SUPERFAMILY L domain-like 39 334 - -
Viun2g01622 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 344 648 - -
Viun2g01622 1023 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 76 343 - -
Viun2g01622 1023 Pfam Protein kinase domain 714 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01622 1023 Pfam Leucine rich repeat 548 606 IPR001611 GO:0005515
Viun2g01622 1023 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 794 1022 - -
Viun2g01622 1023 ProSiteProfiles Leucine-rich repeat profile. 328 349 IPR001611 GO:0005515
Viun2g01622 1023 Gene3D Phosphorylase Kinase; domain 1 693 793 - -
Viun2g01622 1023 Gene3D Transferase(Phosphotransferase) domain 1 794 1017 - -
Viun2g01622 1023 PANTHER OS04G0122200 PROTEIN 227 1014 - -
Viun2g01622 1023 SUPERFAMILY Protein kinase-like (PK-like) 686 1010 IPR011009 -
Viun2g01622 1023 CDD STKc_IRAK 718 1013 - -
Viun2g01622 1023 Gene3D Ribonuclease Inhibitor 97 335 IPR032675 -
Viun2g01622 1023 Gene3D Ribonuclease Inhibitor 35 96 IPR032675 -
Viun2g01622 1023 Gene3D Ribonuclease Inhibitor 336 651 IPR032675 -
Viun2g01622 1023 SMART LRR_typ_2 473 496 IPR003591 -
Viun2g01622 1023 SMART LRR_typ_2 521 545 IPR003591 -
Viun2g01622 1023 SMART LRR_typ_2 448 472 IPR003591 -
Viun2g01622 1023 SMART LRR_typ_2 569 592 IPR003591 -
Viun2g01622 1023 SMART LRR_typ_2 129 153 IPR003591 -
Viun2g01622 1023 SMART LRR_typ_2 400 423 IPR003591 -
Viun2g01622 1023 SMART serkin_6 712 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01622 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 684 793 - -
Viun2g01622 1023 SUPERFAMILY L domain-like 377 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01622 Viun-Chr2 26006094 26009830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01622 33 1023 Receptor kinase-like Gene Family AT3G47570 44.865 0.0 831
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun2g01622 Pkinase 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01622 - - gmx:100801459 1473.76