Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01619 ATGAAGGAACCATCAAAGGCATGGAGACCCTTCACTGCAAATTGCTGCTCCACAGAGGACCAAACGGTTTTCAAGAACTTCAGCAGGTGCAAGCCTTCACGTTCTGACTTGTCAAAGAACATTGCTCCTTTGCCATCGTTCAGGAGACTCTCCTTCTCTGATCTCAGTCGTTCTTCGTCTGTGCGAATCAATGAGGATCTTGCACAGTCTTTTGGGTCGGATTTGTTTGATTTTCAGCTGAGTGAGTTGCGTGCCATAACGCAGAATTTCAGCAGCAACTTCTTGCTGGGAGAAGGAGGGTTTGGAACTGTGCATAAGGGCTACGTAGATGATCATCTCAGACTCGGTTTGAAGGCACAACCTGTTGCTGTCAAGCTTCTTGACATTGAAGGCTTGCAAGGACACCGTGAATGGCTAGCAGAAGTGATTTTTCTTGGGCAGCTAAGACACCCCAATTTGGTTAAGTTGATTGGATATTGTTGTGAAGATGAAGAACGATTACTTGTCTATGAATTCATGCCACGTGGAAGTTTGGAGAATCACCTCTTCAGAAGGCTAACATCACTTCCATGGGGAACAAGATTAAAAATTGCAATAGGTGCTGCTAAAGGCCTTTCCTTTTTGCATGGAGCTGAGAAACCAGTCATTTATAGAGACTTCAAGACTTCCAATGTTTTGCTTGATTCAGAGTTCACAGCAAAATTGTCAGATTTTGGACTTGCAAAAATGGGGCCAGAGGGATCAAACACACATGTTTCAACCAGAGTCATGGGCACTTATGGATATGCAGCCCCAGAATACATCTCAACAGGGCATTTAACAACCAAAAGTGATGTCTACAGTTTTGGGGTAGTCCTGCTGGAACTGCTGACAGGAAGAAGAGCAACGGACAAAACAAGACCAAAGACTGAGCAAAACCTTGTAGATTGGTCAAAACCTTACTTGAATAGCAGTAGGAGGTTGAGGTACATTGTGGATCCAAGGCTTGCAGGCCAATATTCTGTGAAGGGTGCAAAGGAAATTGCCCGTTTGGCACTGCAATGCATAAGTTTGAATCCTAAAGACAGACCAAGAATGCCAATGATTGTTGAAACTCTTGAAGCCTTGCAACACTACAAGGACATGGCTGTTACCAGTGGACACTGGCCAGTGTCACAAAAATCTACTAGGAATAAAGTCTCCAACAATAGTAAGATGAATGTGAACACTAGAGCTGGTGCAAACCACAAGCAACCATCACCAGTTCTCAGCAAAAAAACTTGA 1263 0.4394 MKEPSKAWRPFTANCCSTEDQTVFKNFSRCKPSRSDLSKNIAPLPSFRRLSFSDLSRSSSVRINEDLAQSFGSDLFDFQLSELRAITQNFSSNFLLGEGGFGTVHKGYVDDHLRLGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSLPWGTRLKIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSEFTAKLSDFGLAKMGPEGSNTHVSTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNLVDWSKPYLNSSRRLRYIVDPRLAGQYSVKGAKEIARLALQCISLNPKDRPRMPMIVETLEALQHYKDMAVTSGHWPVSQKSTRNKVSNNSKMNVNTRAGANHKQPSPVLSKKT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01619 420 FunFam Serine/threonine-protein kinase BIK1 56 172 - -
Viun2g01619 420 Gene3D Transferase(Phosphotransferase) domain 1 173 389 - -
Viun2g01619 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Viun2g01619 420 SUPERFAMILY Protein kinase-like (PK-like) 73 370 IPR011009 -
Viun2g01619 420 MobiDBLite consensus disorder prediction 381 420 - -
Viun2g01619 420 ProSiteProfiles Protein kinase domain profile. 90 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01619 420 Pfam Protein tyrosine and serine/threonine kinase 96 366 IPR001245 GO:0004672|GO:0006468
Viun2g01619 420 PANTHER OS01G0588500 PROTEIN-RELATED 61 370 - -
Viun2g01619 420 FunFam Serine/threonine-protein kinase PBS1 173 381 - -
Viun2g01619 420 Gene3D Phosphorylase Kinase; domain 1 53 172 - -
Viun2g01619 420 CDD STKc_IRAK 96 369 - -
Viun2g01619 420 ProSitePatterns Protein kinases ATP-binding region signature. 96 125 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01619 Viun-Chr2 25989685 25992977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01619 78 394 Glycoside Hydrolase AT3G07070 50.000 1.32e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun2g01619 PK_Tyr_Ser-Thr 6.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01619 - - gmx:100814241 779.245