Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01607 ATGGAGAGCAACGAGATTCTGGAGGAGCTTCTCAACATCGAGGTCGAGATTCAAGATGTTCAAGAACAAATAAGGGCGTTGATTGAGAGACAAGAGAATTTGTATGAGAGGAAATCGGAGCTGAGTGCTATTCTAGAAGCGTGTAAGGAATCTGGTAACGAGGCCGGTAATGTGGCTTCAAGCGCCGTGGAAGATTGGAGTGGTACATTTGAATGGGATTCTGAAGCAAATGATGTTAGGTTGAATGTTTTTGGCATTTCGTCTTACCGTGCAAATCAAAGAGAGATAATTAATGCCATTATGAGTGGAAGAGACGTTCTGGTTATTATGGCTGCAGGTGGTGGCAAGAGTCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGAAGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCCTTAATTCAAGATCAGGTAATGGGTTTGACTGCACTGGGCATTCCTGCTTATATGTTGACTTCAACAAATAAGGGAGATGAGAAGTTCATATACAAGGCTTTGGAGAAGGGAGAGGGGGACCTCAAAGTATTGTACGTCACCCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCCGGTCGTCTCTCTCTAATTTCAATTGATGAAGCACATTGCTGTAGTCAGTGGGGCCATGACTTTCGACCTGACTACAAGAGCCTCGGTATTCTCAAGACACAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTGCAAAATGATCTTACAGAGATGTTGCATATTCCTAGATGTGTCAAATTTGTTAGCACAGTCAATAGACCAAATTTGTTTTATATGGTAAAGGAAAAGTCATCAGTTGGGAGGGTAGTCATTGATGAAATTGCACAATTCATTCAAGAATCTTATCCAAATAATGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCGAAGGAGTTGAGGGAGAGAAGAATTTCAGCTGATTATTATCATGCAGATATGGATGTAAATGCTCGGGAAAAAGTTCATATGCGGTGGAGCAATAATAAGCTGCAGGTCATAGTTGGCACAGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCATAGTTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGACGAGCTGGTCGAGATGGACTTCCTTCCGAATGCCTACTTTACTTTAGACCTGGTGATGTTCCACGGCAGAGTTCAATGGTCTTCTATGAAAATTCGGGGCTACAGAATCTCTATGACATAGTACGATATTGTCAGTCCAAAAGACAATGCCGACGAAGTGCCTTTTTCCGACATTTTGCTGAGCCACTTCAAGAGTGCAATGAGATGTGTGACATCTGTGCATGGTCAAGAGAGGTGAAAGAAGTGGATCTCTCTGGTTCTGAATTGAAGCGAGAGGAAATTGAGCAGCTCATCTTACACCTTTTATTGGGGCGGTTTTTGAAAGAAGAATTTCAGCATACAGCTTATGCCACAAATGCCTACATTGCCGTGGGGCCGTTGGCCAAGCAAATACTACAAGGAAAGAAAACTGTGACGCTTGAGATTTACACTGAACAGAGAACTAATGCGGGTGGTGTAAGATCAGTGAAGCGCCGCAGCCTTGGGTCCTCTGGTTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTGTCCTACGCTGGAGGAATACTCCCACACTCAGTCTTATCCATGGAACAAATCAGCTTATTAAGTTCCCAAAAACCGAATTCACTGGAACAGTTGGAGAAGGTAATTGGAAAATTGAAGACAGAAATGTACGGAAATAGAATACTTGAGCAAATTCAAAAGTATTCGGATTCCAAGCCCACTGATAAACAAGAAACTGATGGTAGAGCAGCAAAGAGGTCAAAGACCAAGAAAAATCTTGTGCTCATTGATAGTAGTGAAGATGAAGAATGA 2001 0.4223 MESNEILEELLNIEVEIQDVQEQIRALIERQENLYERKSELSAILEACKESGNEAGNVASSAVEDWSGTFEWDSEANDVRLNVFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTNKGDEKFIYKALEKGEGDLKVLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLGILKTQFPNVPMVALTATATQRVQNDLTEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGRVVIDEIAQFIQESYPNNESGIVYCFSRKECEQVAKELRERRISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNEMCDICAWSREVKEVDLSGSELKREEIEQLILHLLLGRFLKEEFQHTAYATNAYIAVGPLAKQILQGKKTVTLEIYTEQRTNAGGVRSVKRRSLGSSGLELKLDELRKELSYAGGILPHSVLSMEQISLLSSQKPNSLEQLEKVIGKLKTEMYGNRILEQIQKYSDSKPTDKQETDGRAAKRSKTKKNLVLIDSSEDEE 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01607 666 NCBIfam RecQ family ATP-dependent DNA helicase 82 484 IPR004589 GO:0004386|GO:0006310
Viun2g01607 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 422 IPR027417 -
Viun2g01607 666 SMART helicmild6 325 406 IPR001650 -
Viun2g01607 666 Gene3D - 484 551 IPR036388 -
Viun2g01607 666 FunFam ATP-dependent DNA helicase 279 475 - -
Viun2g01607 666 Pfam RecQ zinc-binding 418 474 IPR032284 -
Viun2g01607 666 Pfam HRDC domain 569 627 IPR002121 GO:0003676
Viun2g01607 666 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 445 IPR001650 -
Viun2g01607 666 SMART ultradead3 85 287 IPR014001 -
Viun2g01607 666 Gene3D HRDC domain 564 633 IPR044876 -
Viun2g01607 666 Coils Coil 3 37 - -
Viun2g01607 666 Pfam DEAD/DEAH box helicase 91 258 IPR011545 GO:0003676|GO:0005524
Viun2g01607 666 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 271 IPR014001 -
Viun2g01607 666 MobiDBLite consensus disorder prediction 627 666 - -
Viun2g01607 666 ProSiteProfiles HRDC domain profile. 560 638 IPR002121 GO:0003676
Viun2g01607 666 CDD DEXHc_RecQ1 71 278 - -
Viun2g01607 666 CDD SF2_C_RecQ 279 415 - -
Viun2g01607 666 Gene3D - 47 278 IPR027417 -
Viun2g01607 666 PANTHER DNA HELICASE RECQ FAMILY MEMBER 67 611 - -
Viun2g01607 666 SUPERFAMILY HRDC-like 569 633 IPR010997 GO:0000166|GO:0044237
Viun2g01607 666 Gene3D - 279 475 IPR027417 -
Viun2g01607 666 Pfam Helicase conserved C-terminal domain 303 405 IPR001650 -
Viun2g01607 666 MobiDBLite consensus disorder prediction 632 660 - -
Viun2g01607 666 FunFam ATP-dependent DNA helicase 49 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01607 Viun-Chr2 25908131 25919336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01607 84 420 Eukaryotic Initiation Factors Gene Family AT3G19760 19.714 1.14e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01607 K10899 - gmx:100817635 1140.18