Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01598 ATGTCTCTTCTCAGCCGATTCTTCTACAAGCGTCCCCCTGATGGTTTACTTGAATTTGCAGACAGAGTCTATGTATTCGATTCCTGCTTCTCCACCGAAGCCCTCCCAGAGGGAATGTACCAGCTCTACCTCCGCCAAATTCTCTCCGACCTCCACGAGGACTTCCCGGAATCTTCCTTCCTCGCACTCAACTTCCGCGACGGTGACTCCCGCAGCCGCTTCTCCCGCCTCCTCTGCGAACTCGACGCCACCGTCATCGACTATCCCAAGCAGTACGAGGGCTGCCCCCTCCTCCCCCTCTCTCTCCTCCACCACTTCCTCCGCCTCTGTGACACATGCCTCGCCGACCCCGCCGCCGTGATCCTGTTCCACTGTGAGCGCGGCGGCTGGCCCCTCCTCGCCTTTCTCCTTGCTGCTTTCCTCGTTTTCCGGAAGGCGCAGAGTGGGGAGCGGAAGATTCTGGAGATGGTTCACAGGGAGGCGCCGAAGGGGCTGCTGCAGCTGCTGTCGGCGCTCAACCCGATGCCGTCGCAACTGCGGTATGTGCAGTATGTGGCGCGGAGGAACATTGGCGCGGAGTGGCCTCCGCCGGAGAGGGCGTTGTCTCTGGACTGTGTGATACTCAGAGGGGTTCCTGGGTTTGATGGGGGGAATGGGTGCAGGCCGTTGTTTAGGATTTTTGGGAGGAATTTGCTTAGTAAAGGCGGGCTTTCAACGCAGATGATTTATAATATGCATAAGAAGAAGAAGATTTTGAGGCACTATAGACAGGCAGACTGTGATGTGATTAAGATTGATATTCAATGCTTGGTGCAAGGGGATGTGGTGTTGGAGTGCGTGCATTTGGATTTGGATCCGGAGAGGGAGGTGATGATGTTTCGAGTGATGTTCAATACGGCGTTCATTCGGTCAAACATCTTGATGCTCAATGCTGAGAACTTGGACATTCTGTGGGATTCGAAGGAGCGGTATCCAAAGGGCTTCCGGGCTGAGGTATTGTTTGGGGAGGTAGAAAACATAAGTCCTCAAAGGGCTCCCACAAGTATTTTAGATGGTGAGGTGAAAGGTGGATTACCCATTGAGGCATTTTCAAGGGTTCAAGAACTTTTCAGTGGCGCAGAATGGATTGACAGTGGTGATTCTGCTGCTGTATGGCTTCTTAAGCAGCTTACAGTCTTAAACGACGCCAAAGAATTTTCAAGGTTTCAGGGTAGAGGAAGTTGGTATTCATCTCCTGCTGACTCTGAAGAAGAAAATAATGAGTCGAGCACTGCTGATAGTTCAGACGAGGCCTTTGATGTTATTTCCCAGTCTTATGCTGATCCTTCAAAATTATTTACATCTGACACACCTGATTTAGTCCATTTAACTTTTGAAAACAACGGTGGAGATTATGTAAATCTAACTTCAAGAACACCTGATCAGTCACTAACCGATGATGTTTCATTACCTCACCATGCTCTAACTAAGGAATCTTCTCCTTGTTTGTCTCCACCATCACCTTCACATTTTCCCGCTACTCAACCCCTTCATATACCGGCACTTCTACCTCCATCATCAATACCTATACAGCCAAGTTTAGCTCCTCCCCCACCTCCGAATCCTTTAGTTCAGAATCTGAACAATGCTTCTACATTGCCTTCAACTCCTCCTCCACCCCCTCTCCCTCCTGTAGGTGGGCATGCCGATAGCACTCTTGGTTTACCTCCATCTCCTCTAGGATCTGTAAGAACAAGTTCAGCCCCTCCACCACCACCACCTCCTCCTCCTCCTCCTGCACTTGGACCTGTACAAACAAGTTTAGTCCCACCACCACCACCTCCTCCTCCTCCTCCACCAGTGAGAACAAATTCAGCCCCACCACCTCCACCTCCACCTCCACCACCTCCTCCTCCTCCTCCTTTAGGTCCTACGCAAACAGGTTCAGCCCCACCACCACCACCTCCACCTCCACCTCCTTTAGGATCTGTACAAACAGGTTCAGCTCCACCACCACCACCACCACCTCCACCTCCTTCAGCTCTTGCACGAACAAGTTCAGTTCCGCCTCCACCTCCACCTCCTCCAGGTCCTACACAATTAGGTTCTTTACCGCCACCTCCTCCACCACCACCGCCAGGTCTTGTAAAAACAGGTTCTGTTCCACCACCACCTCCACCTCCTCCTCCTCCAAGTCATGTACAAACAGGTTCAGCTCCACCTCCACCTCCACCTCCTCCAGGTCCTGTACGAACAGGTTCAGCTCCACCACCCCCTCCACCCCCTCCAGGTCCTGTACGAACAGGTTCGGCTCCACCACCCCCTCCACCCCCTCCAGGTCCTCTGCAAACAGGTTCAGCTCCACCACCACCTCCACCTCCTCCAATTGTTGTACGAGCAGGTTCAACTCCACCACCACCTCCACTGCCTCCAGGTGCTGTGCGAACAGGTTCAGCCCCACCACCACCTCCTCCTCCTCCTGGTCCAGTACGAACAGGTTCAGCTCCCCCACCACCACCTCCTCCTCCAGGTCCTGTACGAACAGGTTCAGCCCCACCACCGCCTCCACCTCCTCCAGGTCCTGTAAGAACAGGTGCAGCCCCTCCACCACCTCCTCCTCCAGGTCCTATACGAACAGGTTCAGCTCCACCACCACCACCACCATTGGCACCAAGGCCCCCAGGTGCTCCTCCTCCTCCTCCACCTGGTCGTGGTGCATCTCCAATACCACCTGCAGTTACAGCCTCTAGTGTGGCACCACCTCCTGGCAAAGCGTCAACAACAAATGTTGGTAGAGGTCGTGGTACTGGTGCTACTGCTAATGCTCCAAAGAAAACTTTGCTAAAACCCCTACACTGGGTGAAAGTTGCTCGAGCAGCCAAGGGAAGTCTATGGGCTGATTCACAGAAACAGGATAGTGGAACAAGGGCCCCTGAGATAGATATATCAGAACTTGAGACCCTGTTTTCAGCAGCATCTACTTCTGATGGGAGCAGTACTAGAGGTGGAGGTCGGCGTGGTCCTAATATTAACAAGCCGGAGAAAGTACAACTGGTTGACTTGCGTAGAGCATACAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTAAAGCAGTACTGGCATTGGATTCTTTGGTTCTTGATATTGATCAGGTTGAGAATCTCATCAAGTTCTGTCCAACAAAGGAAGAGATGGAAATGTTAAAGAATTATGCAGGAAACAAGGAAATGCTTGGAAAGTGTGAGCAGTTTTTTATGGAGCTGATGAAGGTTCCGCGTGTGGAATCCAAATTAAGGGTTTTTGCTTTTAAAATTACCTTTTCTTCTCAGGTTAACGATTTGAAGGTAAATTTGAACACAATCAACAATGCAGCCAGAGAGGTGAAAGAATCTGGGAAATTGCGTCAAATAATGCAGACTATTCTTACTCTGGGAAATGCCTTGAATCAAGGAACAGCACGGGGATCAGCTGTTGGATTCAAATTGGATAGCCTTCTTAAATTATCCGACACTCGTGCAAGAAATAATAAAATGACTTTAATGCATTATTTGTGCAAGCTTCTTGCTGAGAAAATGCCAGAATTGCTAGATTTTGATAAGGATCTTGTCCATTTGGAAGCAGCTTCTAAGATTCAACTAAAAGCATTGGCCGAGGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTGGAGCAAGAACTCGCTGCTTCTGAAAATGATGGCGCCATATCAATAGGATTTCGTAAGGTGTTGAAGAATTTTCTTGATATTGCTGAAGCTGATGTGAGGTCCCTTATATCATTGTATTCTGAAGTGGGAAGAAGTGCAGACTCTTTGTCCCAATACTTTGGAGAGGATCCAGCTAGATGCCCCTTTGAACAAGTGACACAAATCCTTGTTGTCTTTGTGAAGATGTTCAACAAGTCAAGGGAGGAGAATGAAAGGCAAGCAGATGCTGAAAAGAAGAAATTAGAGAAAGAAGCCTTGAAGGAAAAGGCAGCAAATAATTCACATTCCAAAAGAGACATGATTCGGTAG 4035 0.4959 MSLLSRFFYKRPPDGLLEFADRVYVFDSCFSTEALPEGMYQLYLRQILSDLHEDFPESSFLALNFRDGDSRSRFSRLLCELDATVIDYPKQYEGCPLLPLSLLHHFLRLCDTCLADPAAVILFHCERGGWPLLAFLLAAFLVFRKAQSGERKILEMVHREAPKGLLQLLSALNPMPSQLRYVQYVARRNIGAEWPPPERALSLDCVILRGVPGFDGGNGCRPLFRIFGRNLLSKGGLSTQMIYNMHKKKKILRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNAENLDILWDSKERYPKGFRAEVLFGEVENISPQRAPTSILDGEVKGGLPIEAFSRVQELFSGAEWIDSGDSAAVWLLKQLTVLNDAKEFSRFQGRGSWYSSPADSEEENNESSTADSSDEAFDVISQSYADPSKLFTSDTPDLVHLTFENNGGDYVNLTSRTPDQSLTDDVSLPHHALTKESSPCLSPPSPSHFPATQPLHIPALLPPSSIPIQPSLAPPPPPNPLVQNLNNASTLPSTPPPPPLPPVGGHADSTLGLPPSPLGSVRTSSAPPPPPPPPPPPALGPVQTSLVPPPPPPPPPPPVRTNSAPPPPPPPPPPPPPPPLGPTQTGSAPPPPPPPPPPLGSVQTGSAPPPPPPPPPPSALARTSSVPPPPPPPPGPTQLGSLPPPPPPPPPGLVKTGSVPPPPPPPPPPSHVQTGSAPPPPPPPPGPVRTGSAPPPPPPPPGPVRTGSAPPPPPPPPGPLQTGSAPPPPPPPPIVVRAGSTPPPPPLPPGAVRTGSAPPPPPPPPGPVRTGSAPPPPPPPPGPVRTGSAPPPPPPPPGPVRTGAAPPPPPPPGPIRTGSAPPPPPPLAPRPPGAPPPPPPGRGASPIPPAVTASSVAPPPGKASTTNVGRGRGTGATANAPKKTLLKPLHWVKVARAAKGSLWADSQKQDSGTRAPEIDISELETLFSAASTSDGSSTRGGGRRGPNINKPEKVQLVDLRRAYNCEIMLSKIKIPLPDMLKAVLALDSLVLDIDQVENLIKFCPTKEEMEMLKNYAGNKEMLGKCEQFFMELMKVPRVESKLRVFAFKITFSSQVNDLKVNLNTINNAAREVKESGKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELAASENDGAISIGFRKVLKNFLDIAEADVRSLISLYSEVGRSADSLSQYFGEDPARCPFEQVTQILVVFVKMFNKSREENERQADAEKKKLEKEALKEKAANNSHSKRDMIR 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01598 1344 SMART it6_source 526 1344 IPR015425 -
Viun2g01598 1344 Gene3D - 195 340 - -
Viun2g01598 1344 SMART PTEN_C2_2 196 1043 IPR014020 -
Viun2g01598 1344 Pfam Formin Homology 2 Domain 936 1306 IPR015425 -
Viun2g01598 1344 Coils Coil 1110 1130 - -
Viun2g01598 1344 ProSiteProfiles C2 tensin-type domain profile. 198 337 IPR014020 -
Viun2g01598 1344 Gene3D Formin, FH2 domain 931 1317 IPR042201 -
Viun2g01598 1344 MobiDBLite consensus disorder prediction 576 901 - -
Viun2g01598 1344 MobiDBLite consensus disorder prediction 984 1006 - -
Viun2g01598 1344 MobiDBLite consensus disorder prediction 407 429 - -
Viun2g01598 1344 MobiDBLite consensus disorder prediction 913 928 - -
Viun2g01598 1344 Gene3D Protein tyrosine phosphatase superfamily 15 189 IPR029021 -
Viun2g01598 1344 MobiDBLite consensus disorder prediction 460 937 - -
Viun2g01598 1344 PANTHER FORMIN-J 1 1337 - -
Viun2g01598 1344 FunFam Formin-like protein 930 1317 - -
Viun2g01598 1344 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 337 IPR035892 -
Viun2g01598 1344 ProSiteProfiles Formin homology-2 (FH2) domain profile. 931 1331 IPR015425 -
Viun2g01598 1344 Pfam C2 domain of PTEN tumour-suppressor protein 197 335 IPR014020 -
Viun2g01598 1344 MobiDBLite consensus disorder prediction 984 998 - -
Viun2g01598 1344 MobiDBLite consensus disorder prediction 462 479 - -
Viun2g01598 1344 Coils Coil 1212 1239 - -
Viun2g01598 1344 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1006 1334 - -
Viun2g01598 1344 MobiDBLite consensus disorder prediction 1310 1344 - -
Viun2g01598 1344 Coils Coil 1306 1333 - -
Viun2g01598 1344 MobiDBLite consensus disorder prediction 498 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01598 Viun-Chr2 25836588 25846325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01598 1 469 FH2 protein (formin) Gene Family AT1G31810 69.427 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01598 - - var:108334847 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01598 2 25836588 25846325 Viun2g01598 2 25836588 25846325 ECH