Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01597 ATGGGTTACGATTCGGCTAGCCCCTCGCAGGATGGGCGGGACGAAGATGATGAAGAAGAATATGAGGAGTCTGGCAAGGGTAATCGATTTCTTGGGTTCATGTTTGGAAATGTAGATAATTCTGGTGATCTCGATGTTGATTATCTTGATGAGGATGCAAAGGAGCATCTTTCTGCATTAGCCGATAAGTTGGGTCCATCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACCACCTGACGTTGTTGAACAAGACTGTCATGAAAAAGCTGAAGACGCTGTTGATTATGAAGATATTGACGAAGAGTATGATGGTCCAGAGACAGAGGCTGCCAATGAAGAAGACTATTTATTGCCAAAAAAAGAATTTTTCTCTGCTGAAGCATCTGTATGTATGGAATCCAAAGCTTCTGTATTTGATGATGAAAATTATGATGAAGAATCTGAGAAGGAGCAAGACTTTCTGAATGAAGACTCTAAACCTGATAATATTTCCGTACCTGAGGAGCAGGAAGAGGCTGTGGTAGATGCATCTAAAGAAGAGAGTGCTCTTGAACGTGAATTACATGTTGACTTACTGCAGACTGAAGAATTGGATGCTGATGTACAAAAACCTGAGGAGGAAGGGCCTGAAGTCCAGAAAAGGTCTATGGCTATGCCGTTGCCTGTTTTATATGTGGAAGATGGTGTGGCAATTTTACGCTTCTCTGAAATCTTTGGCATTCATGAACCTCTCAGAAAGGGAGAAAAGAGAGAACATCGGCAACCTAATCCTAGGGATAGATACAAGTCTTTGGATTTTACTGATGATTTTGTAGAAGAGGATGAAGAGGAATTCCTCAAGGGCTCCTCCCAGAGTCTCTCACATGCTAAACAAGTTTCTGTAGTTCATAATGATGTATCAGAAAGCAACGATGTTGACTTGGAGTTTCCAAAATTTGGGTTTCTTCATGCGGAGCCCTCAGTGGCCAGGAAAGATGATCATCAATCAAAGGACTCGTGTCACAGTGCTGAACCAATGAAAGGGGATTTTGAAGAAGACCTTTCCTGGAAAGATCATCCTTTCATATGGACCAACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCATTTGGGGCAATTCTCCTGTTCCAAGTAATAATAATATTGAAAGTTGTGAAGTTTCTGGACCTGAGTTGGGGGTTTCTGGTGGCAGTGAAATAGAAATTGAAAGTGGGATCCAGAATATTCAGCTGGAGCCTCACAAGATACTGGAAGATAAAGATCATGATGTGTTGCTCAGCTCTCCTGTCTCATTGGAGGCCTTTGGCTCAAGGGATTCTTCTGAAGCTAAAACCAATCTAATATCTAGAAGTCTTTTTCACCCCCAACTTTTAAGGTTAGAATCCAAATCTGAAGTGGATAGTGCTAGTCTTGCAGATGGAAAAGAGGAGGAGTTATCTAAACATAATCAAAGTGGTCAAATTACACGTTTTAACAAGGCTATATCACAAAATAGAGACATGATGGAGGGTTCCTGGTTAGACGAGATAATATGGGAGGAGCTTGATCAGCCTGTGGTCAAACCAAAGCTTATCTTTGATCTTCAGGATGATCAAATGCACTTCGAAGTTTTGGATAGCAAGGATGGTGCACATCTTCGTCTTCATGCTGGGGCTATAATTTTAACTCGTTCTTCAAAATCAAGCAGTGGGGACTCTTCTGAACTACCAGGACATGGAAGTCAATATGGATGGCGATACGTTTCTAATGACAAACATTATTCAAATCGCAAAACTTCTCAGCAATTGAAATCAAATTCCAAAAAACGCTCAGCACACGGTGTCAAAGTTTTTCACTCTCAACCTGCGCTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCAAAAGCATTATGGTATCCCCATGACAGTGAAGTTGCTGTCAAAGAACAAGGGAAATTGCCAATACATGGACCCATGAAGATTATTATAAAGAGTTTGGGTGGCAAGGGGAGTAAATTGCATGTGGATACTGAAGAAACTCTCTCAACTGTTAAAGCAAGAGCTTCCAAAAAGCTAGATTTTAAGGCATCGGAAACAGTGAAAATATTTTGTTTAGGGAGGGAGCTTGAAGATCAGAAGTCACTTGCTGAACAAAATGTTCAACCAAACTCCTTGTTACATCTTGTTCGTTCAAAGATACATTTGTGGCCAAAAGCACAGAGGGTTCCTGGGGAGAACAAGTCCTTGCGTCCTCCTGGGGCATTCAAGAAAAAGTCTGATCTGTCTGTAAAAGACGGACATGTTTTTCTGATGGAGTATTGTGAAGAAAGACCTTTACTTTTGAGCAATGTTGGAATGGGTGCAAGACTTTGTACATACTATCAAAAATGCTCACCTGATGATCAATCTGGCTCTTTATTACGCAACACAGATAGTAGCTTGGGGCACGTTATTTCTCTGGATCCTGCTGATAAGTCTCCTTTCCTTGGAGATTTAAAACCTGGTTGCTGTCAGTCATCGCTAGAGACAAATATGTATAGAGCACCTGTATTTCCTCATAAAGTTCCACTAACTGACTACCTGCTGGTTCGCTCACCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAATTAATGTTGTTGGACAGCAGGAGCCACTCATGGAGGTATTTTCACCGGGAAGTAAAAATCTTCAGACTTACATGATGAACAGGTTGTTGGTACACATGTGCCGTGAATTCCAAGCAGCAGAGAAGCGGCACTTGCCTCCTCATATCCGTGTTGATGAATTTCTCTCACAGTTTCCTTACCAATCGGAAGCGTCATTTCGTAAGAAAATCAAGGAATATGCAAATTTACAGAGGGGAGCAAATGGACAGTCGATTTTGGTTAAAAAGAGAAATTTCCGCATGTGGTCAGAGGATGAATTGAGAAAAATGGTTCCGCCAGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCAGGTCTCTACCGGCTAAAACACTTAGGAATAACTGAAACACACCCTACAAATATTTCGTCTGCAATGAGTCGGCTTCCTGATGAAGCAATAGCATTGGCTGCTGCATCACACATTGAGAGGGAACTGCAGATTACTCCTTGGAACTTAAGTAGCAATTTTGTTGCTTGTACAAGCCAGGGCAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCTTCTGGTCGTGGCATGGGTTTCAGCTATGCTCGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAATGGTGAAGAAGAAAGCAGCTGCTAACCGTGGAGGTTCCACTGTTACTGGTACAGATGCTGATCTACGGAGATTAAGCATGGAGGCTGCACGAGAGGTTCTTGTTAAGTTCAATGTTCCTGAGGAAGTCATTGCTAAACAAACCAGGTGGCATCGCATTGCTATGATACGTAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGATCCGACAACCATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACTAGAGAAAAATGCCAGGAGATTTGGGATCGACAAGTTCAGAGTCTGTCAGCTGTAAATGCTGATGAGAACGAGAGTGATTCGGAAGGGAATAGTGATCTGGATTCTTTTGCCGGAGACCTGGAAAATTTACTTGACGCTGAGGAGTTTGAAGAGGGAGAAGAAGGTACAAATGACTTAAAACGTGACAAGGGAGATGGTGTTAAGGGTCTTAAAATGAGAAGGCGCTCAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCTGAGGCTGCTGAATTGCGCAGGTTGCTCATGGATGATGATGAAGCTGATAGGAAGAAAAAGAAGAAAACTAAAGTAACAGGGGAAGAAACAAGATCGGTATCAAAGATGCAATCAAAATTTGGCTTTGACAATGCCGAACAAGTTAAGCAAATAACAAATAGTTTACAATTAGATGGAAATATTCCCTTGAAAGAGGACGCCATTACAGATCTTAGAGAGGAGGAAAATTTTGGTGCTAAAAAAAGCAAATCACTGAAGGTCAATAAAGCCAAAAAGAATGATATTGCACCTATTTCTCTTCCTAATAAAAAAATCAAATTGAATATGGGAGAAGGAATTAAGAACCAGGTGTTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGTCAGGCTGGGCATATGCGAACAAACAAGAACTGTCCAAAATATGGTGAAGATCTTGAAACTCAACTTGAATCTGCAGATGTGGAAAAATCATCTGGGAAAACCATATCTGTGGACCCCTCCAGTCACTCCCAGCCTAAAGCCCCCTCCAAAAAGTCAAGTTCCAAAAGCAACACAAAGATTACTCCTGTTGACATCGGCAAAATTCCACTGAAGTTCAAATGTGGATCCACAGAGAAATCTTCTGATAAACCTGTAACGGAGGCCCTGCAAAACTCTGACAAGCCAGTCACTTCGGATTCAGAAACTGCAAAGTCTGCTAAGGTTAATAAGATAATTATTCCCAAAAAAGTGAAACCAGATGATACACAGGCTGAATCTCGTAAACATGCTGTTGTGATAAGGCCTCCTACTGAATCAAGTAGAGGGCCTCCTGCTGATTCAGGTAGAGGGCCTCCTACTGATGCAGGCAGGGGTCACAATGATTATCACAAGTTACCAATTAAAATACGACCACCAGCAGAGGAGCAAAGTCACAAAAAGATTGTTATAAGACGTACGAAGGAGGTTATTGATGCAGAACTGGATAGTCCTGTTGGAAACTCTGGACTTCAACACAGAAAGACAAAAAGAATTGTTGAATTGTCAAATTTTGAGAAACAAAAGAAACAGGAGACCGTGTATGGAACTGGGGGTTTTCCAAAATGGAACACTAAAGAGGACAGAAGATGGTGGGAAGAGCAAGAGAAACGAAGAAATGATGCAAGACTTCGAGAAGAAGACAGAGCAAGGAGGCATCACAAAGAAGAAATGAGGATGCTCAAAGAGCAAGAAAGGTTAGATGAAATAAAAAGATTTGAAGAAGATATCAGAAGAGAGAGGGAGGAAGAAGAACGGCAAAAAGCTAAGAAAAAGAAGAAGAAAAAGCCTGATTTAAGAGATGAGTATTTAGATGATCCCAGAGCAAGAAGACATGATAAGAGAATGCCAGAAAGAGACAGGAGTGGAAAAAGGAGATCTGTTGCCGAGTTAGGAAAGCTCAATGCAGATTATATGCCGCCAACAAAACGCCGAAGAGGGGGAGGGGGAGAGGTTGGTTTGGCAAATATCTTGGAGGGCATTGTGGACACAATGGTAAAAGATAGGTACGAGCTGTCGTATCTTTTCGTGAAACCAGTGTCGAAGAAAGAGGCTCCTGACTACCTGGACATTATAGATACGCCTATGGATCTTTCGAGAATAAGGGAGAGAGTACGGAACATGGAGTACAAGAGCCGAGAAGATTTCAGGCATGATGTCTGGCAGATAACTTTTAATGCACATAAATACAACGACGGTAGAAATCCTGGAATTCCTCCCCTTGCAGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGATGATAGCCTCACTTCAGCAGAAGCTGGCATTGAAACTAGAGATTTCTAA 5703 0.417 MGYDSASPSQDGRDEDDEEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDVVEQDCHEKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKEFFSAEASVCMESKASVFDDENYDEESEKEQDFLNEDSKPDNISVPEEQEEAVVDASKEESALERELHVDLLQTEELDADVQKPEEEGPEVQKRSMAMPLPVLYVEDGVAILRFSEIFGIHEPLRKGEKREHRQPNPRDRYKSLDFTDDFVEEDEEEFLKGSSQSLSHAKQVSVVHNDVSESNDVDLEFPKFGFLHAEPSVARKDDHQSKDSCHSAEPMKGDFEEDLSWKDHPFIWTNFYPLDQQDWEDEIIWGNSPVPSNNNIESCEVSGPELGVSGGSEIEIESGIQNIQLEPHKILEDKDHDVLLSSPVSLEAFGSRDSSEAKTNLISRSLFHPQLLRLESKSEVDSASLADGKEEELSKHNQSGQITRFNKAISQNRDMMEGSWLDEIIWEELDQPVVKPKLIFDLQDDQMHFEVLDSKDGAHLRLHAGAIILTRSSKSSSGDSSELPGHGSQYGWRYVSNDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDSEVAVKEQGKLPIHGPMKIIIKSLGGKGSKLHVDTEETLSTVKARASKKLDFKASETVKIFCLGRELEDQKSLAEQNVQPNSLLHLVRSKIHLWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDSSLGHVISLDPADKSPFLGDLKPGCCQSSLETNMYRAPVFPHKVPLTDYLLVRSPKGKLSLRRIDKINVVGQQEPLMEVFSPGSKNLQTYMMNRLLVHMCREFQAAEKRHLPPHIRVDEFLSQFPYQSEASFRKKIKEYANLQRGANGQSILVKKRNFRMWSEDELRKMVPPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLVKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNADENESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDGVKGLKMRRRSTLAQAEEEIEDEAAEAAELRRLLMDDDEADRKKKKKTKVTGEETRSVSKMQSKFGFDNAEQVKQITNSLQLDGNIPLKEDAITDLREEENFGAKKSKSLKVNKAKKNDIAPISLPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQAGHMRTNKNCPKYGEDLETQLESADVEKSSGKTISVDPSSHSQPKAPSKKSSSKSNTKITPVDNXGKIPLKFKCGSTEKSSDKPVTEALQNSDKPVTSDSETAKSAKVNKIIIPKKVKPDDTQAESRKHAVVIRPPTESSRGPPADSGRGPPTDAGRGHNDYHKLPIKIRPPAEEQSHKKIVIRRTKEVIDAELDSPVGNSGLQHRKTKRIVELSNFEKQKKQETVYGTGGFPKWNTKEDRRWWEEQEKRRNDARLREEDRARRHHKEEMRMLKEQERLDEIKRFEEDIRREREEEERQKAKKXKKKKKPDLRDEYLDDPRARRHDKRMPERDRSGKRRSVAELGKLNADYMPPTKRRRGGGGEVGLANILEGIVDTMVKDRYELSYLFVKPVSKKEAPDYLDIIDTPMDLSRIRERVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSLTSAEAGIETRDF 1902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01597 1902 Coils Coil 1263 1290 - -
Viun2g01597 1902 MobiDBLite consensus disorder prediction 1573 1599 - -
Viun2g01597 1902 Gene3D - 22 68 IPR036741 -
Viun2g01597 1902 MobiDBLite consensus disorder prediction 1 29 - -
Viun2g01597 1902 MobiDBLite consensus disorder prediction 1530 1551 - -
Viun2g01597 1902 MobiDBLite consensus disorder prediction 156 174 - -
Viun2g01597 1902 SMART ubq_7 668 740 IPR000626 GO:0005515
Viun2g01597 1902 MobiDBLite consensus disorder prediction 1725 1761 - -
Viun2g01597 1902 SUPERFAMILY Bromodomain 1769 1890 IPR036427 GO:0005515
Viun2g01597 1902 Gene3D - 1699 1901 IPR036427 GO:0005515
Viun2g01597 1902 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Viun2g01597 1902 CDD Ubl_TAFs_like 668 739 - -
Viun2g01597 1902 MobiDBLite consensus disorder prediction 1236 1320 - -
Viun2g01597 1902 MobiDBLite consensus disorder prediction 142 174 - -
Viun2g01597 1902 FunFam Transcription initiation factor TFIID subunit 1 650 740 - -
Viun2g01597 1902 MobiDBLite consensus disorder prediction 1706 1761 - -
Viun2g01597 1902 MobiDBLite consensus disorder prediction 1282 1311 - -
Viun2g01597 1902 PRINTS Bromodomain signature 1801 1814 IPR001487 GO:0005515
Viun2g01597 1902 PRINTS Bromodomain signature 1849 1868 IPR001487 GO:0005515
Viun2g01597 1902 PRINTS Bromodomain signature 1815 1831 IPR001487 GO:0005515
Viun2g01597 1902 PRINTS Bromodomain signature 1831 1849 IPR001487 GO:0005515
Viun2g01597 1902 MobiDBLite consensus disorder prediction 97 114 - -
Viun2g01597 1902 Pfam TATA box-binding protein binding 18 61 IPR009067 -
Viun2g01597 1902 Coils Coil 1673 1720 - -
Viun2g01597 1902 MobiDBLite consensus disorder prediction 1210 1229 - -
Viun2g01597 1902 SMART bromo_6 1777 1888 IPR001487 GO:0005515
Viun2g01597 1902 ProSiteProfiles Ubiquitin domain profile. 668 738 IPR000626 GO:0005515
Viun2g01597 1902 MobiDBLite consensus disorder prediction 1246 1274 - -
Viun2g01597 1902 Pfam Bromodomain 1789 1864 IPR001487 GO:0005515
Viun2g01597 1902 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 13 1901 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Viun2g01597 1902 MobiDBLite consensus disorder prediction 1418 1599 - -
Viun2g01597 1902 Coils Coil 1722 1726 - -
Viun2g01597 1902 MobiDBLite consensus disorder prediction 62 117 - -
Viun2g01597 1902 MobiDBLite consensus disorder prediction 1443 1479 - -
Viun2g01597 1902 Pfam Ubiquitin family 670 741 IPR000626 GO:0005515
Viun2g01597 1902 SUPERFAMILY Ubiquitin-like 638 738 IPR029071 -
Viun2g01597 1902 MobiDBLite consensus disorder prediction 1496 1522 - -
Viun2g01597 1902 ProSiteProfiles Bromodomain profile. 1798 1868 IPR001487 GO:0005515
Viun2g01597 1902 Pfam Protein of unknown function (DUF3591) 587 1154 IPR022591 -
Viun2g01597 1902 CDD Bromodomain 1787 1883 - -
Viun2g01597 1902 ProSitePatterns Bromodomain signature. 1803 1860 IPR018359 -
Viun2g01597 1902 Gene3D - 668 741 - -
Viun2g01597 1902 MobiDBLite consensus disorder prediction 1660 1694 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01597 668 738 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 39.437 7.35e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01597 K03125 - gmx:100780733 3164.4