Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01589 ATGAAGTATTCTTCTTCCATCTTACTCACATCTTGGTCCATTTGTGCTCAATTCTTTTCTCTCTTCACAATCAACACACTATGCTTTACACCAAATGCAGCAGCTTTTACATCAGGAAATGAGACTGATAATCTAGCATTGCTGAAATTCAAGGACTCCATAACCGATGATCCACATGGAATCTTCCTCTCCTGGAATACTTCTACTCACTTTTGTAACTGGTATGGAGTCACATGCAATTCCATGTTTCAAAGAGTCACACACTTGAACTTGCAAGGATACAACTTGAAGGGATTCATATCTCCCCATGTAGCCAATCTTTCTTTTATGACAGATTTCAACATTGCAAACAATAGCTTCCATGGAAAAATCCCACAAGAGTTAGGATTATTGTCACAGTTACAGAAACTCTCTCTTCTAAATAACTCCTTAGTAGGTGAAATTCCTACAAATTTGACAGGTTGTGCTCATCTCACAACTTTACTCTTGAATGGGAACAATCTCAATGGAAAAATCCCTGTTCAAATTGCTTCACTTCCAAAGCTTCAACTTTTGGCACTTTATAGCAATCAATTCACAGGGGGAATTCCATCATTCTTAGGAAATATTTCATCACTGATTCGTCTCTCTGTGGCTTCAAACAATTTAGAGGGAAATGTTCCACAGGAAATATGTCGTCTAAAAAGCTTGACGCTTCTTTCATTTAGTGAGAACAAACTCAGTGGAACAATTCCCTTGTGTGTCTATAATATGTCATCTCTTACTGTGATCTCAGCTACAGAAAATCAATTTAATGGCTCTTTTCCACCCTACATGTTTAACACCCTATCCAATCTCCAAGTATTTTATTTTAATCTCAACCAAATCTCAGGCTCAATCCCACCATCCATCACAAATGCATCTAATCTTTCAATATTTGAAATTGGTGGAAACAGCCTCACTGGTGGAGTTCCAAGCATGGGGAAGCTACAAGATCTTTATTATTTTGTTGTTGATAAAAACTTTCTAGGTGAAAGTTCAAGTAATGATTTGGTGTTCTTAGAATCATTAACAAATTGTACTAAGTTGAATGTCTTAGATATAGCCTACAACAATTTTGGAAGCCATTTGCCAAATTCTTTGGGCAACTTATCCACTCAACTCACTCAACTATATTTTGGAGGTAATCAGATATCTGGAGAAATTCCTGCAGCACTTGGAAATCTAATTGGCTTAAGTATTTTGGCACTGGAATATAACTTTGTCAGTGGGAAAATCCCAACAACTTTTGGAAAGTTTCAGAAAATGCAGATGTTAAATTTGGGCTCAAACAAGCTTTCAGGAGATATTAAATCCTGGATTGGCAATCTTAGCCAATTGTTTCATTTGGAAATAGGAGAAAACATGTTACAAGGAAACATTCCACCAAGTGTAGGAAACTGTCAAAAGTTACAATACTTGGACATTTCCAATAACAACCTTTCAGGAATCATACCCATAGAGATTTTTCAGCTTTCATCTCTAACAAACGTGTTGGATTTGTCAGAAAACTCATTGAGTGGAAGCATACCAAAAGAAGTGGCCAATTTAAAAAATCTGAATTCATTGTACATATCTGATAATCATCTCTCAGGTGTCATTCCTGAAAGCTTTGGAGAATGCATAATGTTGGAACAAATCTATTTGCAAGGGAATTCCTTACAAGGAAGCATACCATCCTCTTTGGCATCACTCAAAGGACTTGAACAGTTAGACCTTTCACGAAACCAATTATCTGGATCAATACCTAAGATTCTGCAGACAATTTCTTTCTTAGAATACTTGAATGTGTCATTTAACATGTTGAATGGTGAGGTTCCAACTGAAGGTGTCTTCCGAAATGCAAGTGGGGTAGTGATTTCTGGAAATAGTGGCCTCTGTGGAGGTATTTCAAAACTACATCTACCATCATGCCCTGTCAAAGGTAAGAAACTTGTAAAACACAAGTTCAAATTGATGATAGTGTCAGTGATAGTGAGTGTGGTTGTCATTTTTCTCATGCTACTTATTCTAACTATCTATTGGATGAGGAAAAAGACTAAAAAAGCTTCTTTGGATTCACCAACAATAAACCTGCTAGCTAAAGTTTCATACCAGAGCTTATACAATGCAACTGATGGATTCTCAGTTACAAATTTGATAGGGTGTGGGATTTCTAGTTCTGTCTATAGAGGAACTCTTGAGTTAGAAGATAAAGTTGTCGCCATAAAGGTTCTAAACCTTAAACAAAAGGGATCTCAAAAGAGTTTCCTTGTTGAATGCAATGCACTGAGAAGTATTAGACATAGAAATCTGGTTCAGATTTTGACGTGTTGTTCTGGCACAGATTACAAAGGTCAGGAATTTAAAGCTTTAATTTTTGAGTACATGAGAAATGGAAGCTTGGAGCAATGGCTACACCCAATGTCACTAAATGAAGAACATCCAAGATTATTGAGTCTTGATCAAAGATTAAATATCATCATTGATGTAGCCACTGCCTTAAATTATCTTCACCATGATTGTGAGCCAACAATCATTCACTGTGATTTGAAGCCAAGTAATGTCCTTCTTGATGATGATATGATTGCTCATGTTACAGATTTTGGCATAGCAAGATTTCTCTCAGATACCGAAGACTCCACTTCTTTGAAAACAAGTACAATTGGAATCAAGGGTACTATTGGCTATGCTCCTCCAGAGTATGGAATGAGTTCTGAGGTATCAACTTTGGGTGACATGTATAGCTTTGGAATTCTGGTGTTGGAGATTCTGACAGGAAAAAGACCTACAGATAAAATGTTTGAAGATGGTCTAAATCTTCATAACTTTGTTTCAATTTCATTTCCTAGTAATCTTTTGCAAATTTTGGATCCACGACTTATTCAAACATATGAAGCAACAACATTAGATGGAAATAATTGGAATCTTAATCAAAATGTCGAGAAATGCATAGTTTCACTTTTTATGATTGGACTTGCTTGTTCTGAGGAGCCACCAAAAGAAAGAATGAATGTGGTTGATCTTACCAAGGAGCTTAGTCGAATCAAAAGGGTCTTTTCTGCTGGTGAGTAA 3072 0.3643 MKYSSSILLTSWSICAQFFSLFTINTLCFTPNAAAFTSGNETDNLALLKFKDSITDDPHGIFLSWNTSTHFCNWYGVTCNSMFQRVTHLNLQGYNLKGFISPHVANLSFMTDFNIANNSFHGKIPQELGLLSQLQKLSLLNNSLVGEIPTNLTGCAHLTTLLLNGNNLNGKIPVQIASLPKLQLLALYSNQFTGGIPSFLGNISSLIRLSVASNNLEGNVPQEICRLKSLTLLSFSENKLSGTIPLCVYNMSSLTVISATENQFNGSFPPYMFNTLSNLQVFYFNLNQISGSIPPSITNASNLSIFEIGGNSLTGGVPSMGKLQDLYYFVVDKNFLGESSSNDLVFLESLTNCTKLNVLDIAYNNFGSHLPNSLGNLSTQLTQLYFGGNQISGEIPAALGNLIGLSILALEYNFVSGKIPTTFGKFQKMQMLNLGSNKLSGDIKSWIGNLSQLFHLEIGENMLQGNIPPSVGNCQKLQYLDISNNNLSGIIPIEIFQLSSLTNVLDLSENSLSGSIPKEVANLKNLNSLYISDNHLSGVIPESFGECIMLEQIYLQGNSLQGSIPSSLASLKGLEQLDLSRNQLSGSIPKILQTISFLEYLNVSFNMLNGEVPTEGVFRNASGVVISGNSGLCGGISKLHLPSCPVKGKKLVKHKFKLMIVSVIVSVVVIFLMLLILTIYWMRKKTKKASLDSPTINLLAKVSYQSLYNATDGFSVTNLIGCGISSSVYRGTLELEDKVVAIKVLNLKQKGSQKSFLVECNALRSIRHRNLVQILTCCSGTDYKGQEFKALIFEYMRNGSLEQWLHPMSLNEEHPRLLSLDQRLNIIIDVATALNYLHHDCEPTIIHCDLKPSNVLLDDDMIAHVTDFGIARFLSDTEDSTSLKTSTIGIKGTIGYAPPEYGMSSEVSTLGDMYSFGILVLEILTGKRPTDKMFEDGLNLHNFVSISFPSNLLQILDPRLIQTYEATTLDGNNWNLNQNVEKCIVSLFMIGLACSEEPPKERMNVVDLTKELSRIKRVFSAGE 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01589 1023 Gene3D Phosphorylase Kinase; domain 1 696 795 - -
Viun2g01589 1023 PRINTS Leucine-rich repeat signature 477 490 - -
Viun2g01589 1023 PRINTS Leucine-rich repeat signature 571 584 - -
Viun2g01589 1023 ProSiteProfiles Leucine-rich repeat profile. 476 497 IPR001611 GO:0005515
Viun2g01589 1023 SMART serkin_6 714 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01589 1023 SMART LRR_typ_2 131 155 IPR003591 -
Viun2g01589 1023 SMART LRR_typ_2 595 620 IPR003591 -
Viun2g01589 1023 SMART LRR_typ_2 227 251 IPR003591 -
Viun2g01589 1023 SMART LRR_typ_2 474 498 IPR003591 -
Viun2g01589 1023 SMART LRR_typ_2 276 300 IPR003591 -
Viun2g01589 1023 SMART LRR_typ_2 523 546 IPR003591 -
Viun2g01589 1023 SMART LRR_typ_2 571 594 IPR003591 -
Viun2g01589 1023 ProSiteProfiles Protein kinase domain profile. 714 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01589 1023 Gene3D Transferase(Phosphotransferase) domain 1 796 1021 - -
Viun2g01589 1023 SUPERFAMILY Protein kinase-like (PK-like) 690 1012 IPR011009 -
Viun2g01589 1023 SUPERFAMILY L domain-like 41 335 - -
Viun2g01589 1023 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 80 345 - -
Viun2g01589 1023 Pfam Leucine rich repeat 550 608 IPR001611 GO:0005515
Viun2g01589 1023 Pfam Leucine rich repeat 476 536 IPR001611 GO:0005515
Viun2g01589 1023 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 796 1023 - -
Viun2g01589 1023 Gene3D Ribonuclease Inhibitor 161 271 IPR032675 -
Viun2g01589 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 684 795 - -
Viun2g01589 1023 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Viun2g01589 1023 Pfam Protein kinase domain 716 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01589 1023 SUPERFAMILY L domain-like 379 634 - -
Viun2g01589 1023 ProSitePatterns Protein kinases ATP-binding region signature. 720 743 IPR017441 GO:0005524
Viun2g01589 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Viun2g01589 1023 Gene3D Ribonuclease Inhibitor 339 651 IPR032675 -
Viun2g01589 1023 Gene3D Ribonuclease Inhibitor 272 327 IPR032675 -
Viun2g01589 1023 Gene3D Ribonuclease Inhibitor 42 155 IPR032675 -
Viun2g01589 1023 PANTHER OS04G0122200 PROTEIN 226 1016 - -
Viun2g01589 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 346 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01589 Viun-Chr2 25783894 25787085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01589 40 1021 Receptor kinase-like Gene Family AT3G47570 44.165 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun2g01589 Pkinase 1.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01589 - - gmx:102664380 1376.3