Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01578 ATGGCGGAGGCTTTACTGGAAATCGTGATTCAAAATTTGGGATCTTTCGTTGAAGACCAACTTGCAACTTATTGGGGTGTTGATCAACAGATTCAAAAGCTTTCCAGCAATCTCACCGCAATCCGTGCTGTCCTCAGAGATGCTGAGAGAAAGCAAATAACAAGTCATGCCATCAAGGATTGGCTGCAAAAACTCACAGATGCAGCATATGTGCTTGATGATATCTTGGATGAATGTTCAATTCACTCCACAAAGGTGCACTCTGATGATGGACAAACTTCATGCCTATCCCGTCTCCATCCTAAGGACATTCACTTCCGCTTTCATATTAGAAAGCGGATGAAAGACATCACAGAAAGATTTCATGACATTCATACAGAAAGGCTGACTTTTGAATTGCGTGTGGATCTCACAAAAAAGCAAGCAGTGGATGATGATGATTGGCGTGAAACTAGTTCTGTCATTACAGAACCCATATTATACGGCAGAGACGAAGATAGAGCGAAAATTGTGAAGTTTCTCCTGGAAGATGCAAATAGCAGTGACGAACTCACCATCTGTGCCATAGTTGGTATGGGGGGACTTGGCAAAACAACTCTTGCCAAGGAGGTCTTCCATGATGACGGGATAAGTAAACATTTTGACTTGAAAATCTGGATCTGTGTTTCGGATGATTTCAAGGTAAAGGAAATCCTGCAATCCATTATAGAATGTACCCTTGGTCCAAATCACAATCTCGATAATTTAGAAGCAAGGCGGAAAAAGGTTGAAGAAGCATTGCAGAGTAAGAGATATTTGCTTGTTCTGGATGATGTGTGGAACGAAAACAGAGAGAAGTGGAATGAGTTGAAGGGGATGTTGGAGTGTGCAAGGGGAGCAAAAGGAGCTACCGTTTTGGTCACCACTCGACTTCAGGAAGTTGTCTCTGTCATGGGAGAGCATTTTTCTTACCCTTTGAAAGCATTGTCGGAAGACGATAGTTGGTCATTGTTCAAACAGCATGCATTTGGACCAAACAGACAAGAAAGGGAGGAGCTTAGGGTAATCGGTGAAGAGATAGTTAGAAAATGCGTCGGTTCCCCACTTGCAATAAAAACACTGGGAAGCTGTTTGCGTGATGAAAATGAAGTAAGACAATGGAAGAATGTAAAGGAAAGTGAAATTTGGGACATACGGGAGGAAAGTAATTCTGCGACAGGTAAGGAAAATTCTATTATGCGTGCTTTGAAATTGAGTTATTCTAATTTGGAGCCATATATGAGGAGATGCTTTTCTTTATGTGCAATATACCCCAAAGATTCTGAGATAGAAAAGGAAGAAATAATTCATCTCTGGATGGCTAATGGATTTATTAAATGCGAAGGAAATGTAGAGGTGGAAGATGTTGGAAATAAAGTGTGGAAAAAATTATACAGTAGATCATTTTTTCAAGAAGCAGAGTATGATAAGTTTGGTATGATAACGACTTTCAAGATGCACGATCTATTTCATGATCTTGCCCAATCTATTATGGGTGAGGAATGTGTGGTTATTATGAAAAAATGGTTGACTCCCTCAAGTAGAGTTCACTATTTAAAGTTGGAAGATTATGATGTGTCTGTTGATGCGAGTTCTTTCAAGCTTGCTTTCAAGAAGCCTGAATCTCTGCGGACTTTATTTTATTTTGGTCGTATGGGCCCAATGCTATCAAATCATTGTTGTCTCCGAGCATTGAGCACAGAGATTACTATGTTGTCCTCACTTAAGAGTTTAGCACATCTGAGATACTTGAGTTTGAGTGGATTTCGTGGTACGCCCGTAAGTTTAAATAACTCAATTTGTGAGTTGTCGAAATTACAAATATTGAAACTGACAAATTGGTACAGACTTTATGGGCTACCCAAAAACTTGACACAATTGCAGGATCTAAGACATATTGTAATTGATGAGTGTCCTTCAATAGTAGAGATGTCTCCGAATATTAGCAAGTTAAGGCATCTAAAAACACTGAGCCTTTTTGTAGTGGGCTCAAAGCCAGGATATGGGTTAGCAGAGTTGCATAGCTTAAAGCTGGGAGGCACGCTGAGAATCAAAGGCCTTGAAAATGTGGCCAATGAATGGGATGCTAAACAAGCAAACTTGATTGATAAGAAGGACTTAAATATCCTATACTTGTCATGGGATGGTAATGCTAATTCAAGAGGTAGTACTGTTAGTGAAGAAATAGTACTGGAAGCCCTGGAACCTCCCTCAACTCTGAAGAGTTTTCATATAAAAGGGTATGAGGGAAGACAGTTATCGAGTTGGATGAGAAGTCCAGCCACTCTAAGAGAGTTGGTGGAAGTTAAGCTCTTGGAGTGTGACAACTGTGAGGAGCTTCCTCCTCTTGGTAAACTACCATACTTGAAAAGGCTAGAGGTGCGTGGAATGAAAAATGTGAAGTGCATAGATGGTGAGACGTATGAGGGCGTGGAGGAGAAGGCATTTCCATCGTTGGAGAAATTGATTCTGAAGAATTTACCAAATTTGGAGAGGTTGTTGAGGGATGAAGGAGTAGAGTTGCTCCCTCGTCTTTCCCAGTTAACAATTGATGGCGTCTCCAACCTTAAATTTCCGCGTCTTCCTTTTGTTGAGGAAGTTTATTATGCTAACAGGATTGACGAAGTGGGTTTCTTCATGGAAGGAGTTGTGGAGAATACGCCTTGTCTAAAGACCCTGAATATTGACTCGATTAAAGGAGTAAAGACACTACCTGACCAACTCGGCACTTTGGATGCTTTAGAGGACCTTGTCATTGGTTATTGGTATGATTTGGAGTATTTTCCAGAACATGTGTTGGAAGGTCTAACTTCTCTTCGAGTCTTACGTATTAATTACTGTCATAAATTAAAATCCTTGTCTGAAGGTGTTCGACATTTGGCATGTCTTCAGCGTTTGTTAATCAGCGCTTGTCCAGAGCTGGTGGGTCTACCAAACAATATGAGCCAACTAACTGCCCTTCAGCACGTGTCAATCAGTATTTGCTCCACATTACCAGATGGCTTACAACGTGTCCCCTCCCTACGTTCTTTGAATATATGGAGTTGCAAGTGTACTTCATTGCCGGACTGGCTGGGAGACATGACTTCTCTTCAAAAATTAGACATTTGGGACTGTAAGGAGTTGAGGACACTGCCGAGTAGCATTCAACGCCTCACCAACTTGTCTTCTTTAAGTATACGCAACTGTTCTCATCTGGAGAAGCGGTGCAAGAGGGAAACAGGAGAGGATTGGCAATACATAAACCACATTCCAAATATAAAATTGAGGGCTCGTTAA 3297 0.4104 MAEALLEIVIQNLGSFVEDQLATYWGVDQQIQKLSSNLTAIRAVLRDAERKQITSHAIKDWLQKLTDAAYVLDDILDECSIHSTKVHSDDGQTSCLSRLHPKDIHFRFHIRKRMKDITERFHDIHTERLTFELRVDLTKKQAVDDDDWRETSSVITEPILYGRDEDRAKIVKFLLEDANSSDELTICAIVGMGGLGKTTLAKEVFHDDGISKHFDLKIWICVSDDFKVKEILQSIIECTLGPNHNLDNLEARRKKVEEALQSKRYLLVLDDVWNENREKWNELKGMLECARGAKGATVLVTTRLQEVVSVMGEHFSYPLKALSEDDSWSLFKQHAFGPNRQEREELRVIGEEIVRKCVGSPLAIKTLGSCLRDENEVRQWKNVKESEIWDIREESNSATGKENSIMRALKLSYSNLEPYMRRCFSLCAIYPKDSEIEKEEIIHLWMANGFIKCEGNVEVEDVGNKVWKKLYSRSFFQEAEYDKFGMITTFKMHDLFHDLAQSIMGEECVVIMKKWLTPSSRVHYLKLEDYDVSVDASSFKLAFKKPESLRTLFYFGRMGPMLSNHCCLRALSTEITMLSSLKSLAHLRYLSLSGFRGTPVSLNNSICELSKLQILKLTNWYRLYGLPKNLTQLQDLRHIVIDECPSIVEMSPNISKLRHLKTLSLFVVGSKPGYGLAELHSLKLGGTLRIKGLENVANEWDAKQANLIDKKDLNILYLSWDGNANSRGSTVSEEIVLEALEPPSTLKSFHIKGYEGRQLSSWMRSPATLRELVEVKLLECDNCEELPPLGKLPYLKRLEVRGMKNVKCIDGETYEGVEEKAFPSLEKLILKNLPNLERLLRDEGVELLPRLSQLTIDGVSNLKFPRLPFVEEVYYANRIDEVGFFMEGVVENTPCLKTLNIDSIKGVKTLPDQLGTLDALEDLVIGYWYDLEYFPEHVLEGLTSLRVLRINYCHKLKSLSEGVRHLACLQRLLISACPELVGLPNNMSQLTALQHVSISICSTLPDGLQRVPSLRSLNIWSCKCTSLPDWLGDMTSLQKLDIWDCKELRTLPSSIQRLTNLSSLSIRNCSHLEKRCKRETGEDWQYINHIPNIKLRAR 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01578 1098 Gene3D - 419 502 IPR036388 -
Viun2g01578 1098 Gene3D Ribonuclease Inhibitor 506 875 IPR032675 -
Viun2g01578 1098 Coils Coil 246 266 - -
Viun2g01578 1098 SUPERFAMILY L domain-like 491 861 - -
Viun2g01578 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 427 IPR027417 -
Viun2g01578 1098 CDD RX-CC_like 2 124 IPR038005 -
Viun2g01578 1098 Gene3D - 321 417 IPR042197 -
Viun2g01578 1098 PRINTS Disease resistance protein signature 259 273 - -
Viun2g01578 1098 PRINTS Disease resistance protein signature 357 371 - -
Viun2g01578 1098 PRINTS Disease resistance protein signature 940 956 - -
Viun2g01578 1098 PRINTS Disease resistance protein signature 186 201 - -
Viun2g01578 1098 SUPERFAMILY RNI-like 892 1072 - -
Viun2g01578 1098 Gene3D Ribonuclease Inhibitor 1002 1078 IPR032675 -
Viun2g01578 1098 Coils Coil 31 51 - -
Viun2g01578 1098 Gene3D Ribonuclease Inhibitor 876 1001 IPR032675 -
Viun2g01578 1098 PANTHER DISEASE RESISTANCE PROTEIN RP 33 836 IPR044974 GO:0006952
Viun2g01578 1098 FunFam Probable disease resistance protein At1g61300 143 315 - -
Viun2g01578 1098 Pfam NB-ARC domain 168 415 IPR002182 GO:0043531
Viun2g01578 1098 Pfam Rx N-terminal domain 6 89 IPR041118 -
Viun2g01578 1098 FunFam Probable disease resistance protein At1g63360 413 502 - -
Viun2g01578 1098 Gene3D - 145 316 IPR027417 -
Viun2g01578 1098 Gene3D - 6 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01578 Viun-Chr2 25701879 25706366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01578 916 1074 WRKY Transcription Factor Family AT4G12020 27.673 2.43e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01578 - - vum:124833357 1540.78