Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01577 ATGGGGTCTACTGAACATGGGAGAGTATCGGTTAGAGAGTTCCAGGCCAATGGAAGCCGCATCGCTGCATCAGAAGTTGAGGCCAAGCTTGATCAAGGAAATATTCAGGAAGCAGAAGATTCGTTGCGCGAAGGATTGTCACTCAATTTCGAGGAAGCACGAGCTCTTCTTGGTAAGTTGGAGTATCAGAGAGGTAACTTAGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGAGGTTGCAATCTTCCTCTTCTGAAAAACCACAAGGCAAGAAAGGTCGTACTCAAAATGAATCAGCCTCGGGTTCTCAGCATGCGGCTAGTTTGGTGCTCGAAGCCATCTACTTAAAAGCCAAGTCTCTGCAAAAACTGGGGAAATTTACAGAGGCTGCTGATAATTGTAAACGTATTCTTGATTCCGTTGAGAAGATATTTTATCAGGGTGTTCCTAATATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCATGCTGTAGAGCTCCTTCCAGAGCTTTGGAAGCAAGCTGGTTGCTATGATGAGGCAATATCTGCTTATAGGCGGGCCCTTCTTAGTCAATGGAACCTTGATAATGACTACTGTGCAAGAATTCAGAAGTCATTTGTTATGTTTCTGCTATACAGCGGGGTGGAGGCAAGTCCACCTAGTTTAGCAGTTCAGACTGAAGGATCATATGTGCCTAAAAATAATCTTGAAGAGGCTATTCTGCTATTGATGGTTCTTTTGAGAAAGTTTAGCCTTGGTAAGATGAAATGGGATCCATCAGTCATGGAACACCTTACTTTTGCACTTTCTATATGTAGCCAAACTTCTACTTTAGCAAAGCAAATTGAAGAGTTGATGCCTGGAGTATACCATCGAATTGATTGTTGGAATTCTTTAGCTTTTTGTTATAGTGGAGCTGGACAAAATGACTGTGCTTTGAGCCTGCTAAGGAAATCTTTGCACAAACATGAACGACCAAATGACCTTACATCATTATTGTTAGCAGCTCGGATCTGCAGTGAGGATTCCCATCTTGCTGCTGAGGGAGTGATCTATGCACAGAGGGCAGTCAATAATGCTCGTGACCAAAATGAGCATTTGAAAGGTGTTGCTCTACGGATGTTGGGACTTTGTCTTGGAAAACATGCTAAGGTAGCTTCCTCTGACTCTGAGAGGTCTCGCCTTCACTCCAAAGCGTTGGAGTCATTGGTGGCAGCAATCAAATTGGAGCCAAACAATTCTGATCTGATTTTTGAATTGGCTGTTCATTATGCACAACACCGAAACTTGTCTAATGCTTTGCGCTCTGCGAGACATTTCTTTAATCAAACAGATGCTGCTTTAGATCAGACTGCGAGATGGGAGCAGGGACCACTGCTTAGGCTGAAAGCAAAGTTGAAGATCTCTCAATCACGACCAATGGATGCTATTGAAACCTATAGGTACCTTCTTGCATTGGTTCAAGCTCAGAAGAAATCCTTTGGGTCTTTCCAAATTAGTTCAAAGGTTTTGGACGATAAAATAAATGAATTTGATATTTGGCATGGTCTGGCAAATTTATATGCTAGTCTTTCTCGTTGGAAGGATGCTGAAATCTGTCTGCAGAAGGCCAGGGACTTGAAGCAATACTCTGCAGCAGTAATGCACACTCAAGGTGTTTTGTCTGAAGGACGTGGGCAAAATGAGGAAGCTCTTCTTGCTACTATTAATGGTATACTATTTGAACCAAACCATGTTCCATGCAAGATCTTGATGGGTGCCATGATTCAAAGAGTGGGTCCAAAGTTTTTTTGTGCTGCAAGAAGCGCACTGTCTGATGCACTCCGAATAGAACCCACTAACCGCATGGCTTGGCATTGCTTGGGATTGCTTAACAAGCAAGATGGCCGAATAAGTGAAGCCGCTGACTGCTTCCAAGCAGCTTCCATGCTTGAAGAATCTGATCCCATCGAAACTTTCAGCTCTATTCTTTGA 1998 0.4309 MGSTEHGRVSVREFQANGSRIAASEVEAKLDQGNIQEAEDSLREGLSLNFEEARALLGKLEYQRGNLEGALRVFDGIDLQAAIQRLQSSSSEKPQGKKGRTQNESASGSQHAASLVLEAIYLKAKSLQKLGKFTEAADNCKRILDSVEKIFYQGVPNIQVDNKLQEIVSHAVELLPELWKQAGCYDEAISAYRRALLSQWNLDNDYCARIQKSFVMFLLYSGVEASPPSLAVQTEGSYVPKNNLEEAILLLMVLLRKFSLGKMKWDPSVMEHLTFALSICSQTSTLAKQIEELMPGVYHRIDCWNSLAFCYSGAGQNDCALSLLRKSLHKHERPNDLTSLLLAARICSEDSHLAAEGVIYAQRAVNNARDQNEHLKGVALRMLGLCLGKHAKVASSDSERSRLHSKALESLVAAIKLEPNNSDLIFELAVHYAQHRNLSNALRSARHFFNQTDAALDQTARWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQKKSFGSFQISSKVLDDKINEFDIWHGLANLYASLSRWKDAEICLQKARDLKQYSAAVMHTQGVLSEGRGQNEEALLATINGILFEPNHVPCKILMGAMIQRVGPKFFCAARSALSDALRIEPTNRMAWHCLGLLNKQDGRISEAADCFQAASMLEESDPIETFSSIL 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01577 665 Pfam Tetratricopeptide repeat 28 75 - -
Viun2g01577 665 Gene3D Tetratricopeptide repeat domain 583 658 IPR011990 GO:0005515
Viun2g01577 665 SUPERFAMILY TPR-like 30 201 IPR011990 GO:0005515
Viun2g01577 665 PANTHER PROTEIN NPG1 8 450 IPR043376 -
Viun2g01577 665 SUPERFAMILY TPR-like 403 649 IPR011990 GO:0005515
Viun2g01577 665 Gene3D Tetratricopeptide repeat domain 467 578 IPR011990 GO:0005515
Viun2g01577 665 SMART tpr_5 301 334 IPR019734 GO:0005515
Viun2g01577 665 SMART tpr_5 553 586 IPR019734 GO:0005515
Viun2g01577 665 SMART tpr_5 519 552 IPR019734 GO:0005515
Viun2g01577 665 SMART tpr_5 623 656 IPR019734 GO:0005515
Viun2g01577 665 SMART tpr_5 117 150 IPR019734 GO:0005515
Viun2g01577 665 Gene3D Tetratricopeptide repeat domain 17 201 IPR011990 GO:0005515
Viun2g01577 665 Gene3D Tetratricopeptide repeat domain 280 451 IPR011990 GO:0005515
Viun2g01577 665 SUPERFAMILY TPR-like 117 442 IPR011990 GO:0005515
Viun2g01577 665 MobiDBLite consensus disorder prediction 87 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01577 Viun-Chr2 25687784 25697921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01577 11 665 Calmodulin-binding Proteins AT2G43040 66.230 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01577 K21843 - gmx:100814609 1083.17