Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01576 ATGGGGTCTACTGAACATGGGAGAGTATCGGTTAGAGAGTTCCAGGCCAATGGAAGCCGCATCGCTGCATCAGAAGTTGAGGCCAAGCTTGATCAAGGAAATATTCAGGAAGCAGAAGATTCGTTGCGCGAAGGATTGTCACTCAATTTCGAGGAAGCACGAGCTCTTCTTGGTAAGTTGGAGTATCAGAGAGGTAACTTAGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGAGGTTGCAATCTTCCTCTTCTGAAAAACCACAAGGCAAGAAAGGTCGTACTCAAAATGAATCAGCCTCGGGTTCTCAGCATGCGGCTAGTTTGGTGCTCGAAGCCATCTACTTAAAAGCCAAGTCTCTGCAAAAACTGGGGAAATTTACAGAGGCTGCTGATAATTGTAAACGTATTCTTGATTCCGTTGAGAAGATATTTTATCAGGGTGTTCCTAATATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCATGCTGTAGAGCTCCTTCCAGAGCTTTGGAAGCAAGCTGGTTGCTATGATGAGGCAATATCTGCTTATAGGCGGGCCCTTCTTAGTCAATGGAACCTTGATAATGACTACTGTGCAAGAATTCAGAAGTCATTTGTTATGTTTCTGCTATACAGCGGGGTGGAGGCAAGTCCACCTAGTTTAGCAGTTCAGACTGAAGGATCATATGTGCCTAAAAATAATCTTGAAGAGGCTATTCTGCTATTGATGGTTCTTTTGAGAAAGTTTAGCCTTGGTAAGATGAAATGGGATCCATCAGTCATGGAACACCTTACTTTTGCACTTTCTATATGTAGCCAAACTTCTACTTTAGCAAAGCAAATTGAAGAGTTGATGCCTGGAGTATACCATCGAATTGATTGTTGGAATTCTTTAGCTTTTTGTTATAGTGGAGCTGGACAAAATGACTGTGCTTTGAGCCTGCTAAGGAAATCTTTGCACAAACATGAACGACCAAATGACCTTACATCATTATTGTTAGCAGCTCGGATCTGCAGTGAGGATTCCCATCTTGCTGCTGAGGGAGTGATCTATGCACAGAGGGCAGTCAATAATGCTCGTGACCAAAATGAGCATTTGAAAGGTGTTGCTCTACGGATGTTGGGACTTTGTCTTGGAAAACATGCTAAGGTAGCTTCCTCTGACTCTGAGAGGTCTCGCCTTCACTCCAAAGCGTTGGAGTCATTGGTGGCAGCAATCAAATTGGAGCCAAACAATTCTGATCTGATTTTTGAATTGGCTGTTCATTATGCACAACACCGAAACTTGTCTAATGCTTTGCGCTCTGCGAGACATTTCTTTAATCAAACAGGTGGTTCTATGTTGAAATCTTGGAGATTGCTTGCTCTAATTTTGTCTGCACAGCAAAGATTTTCTGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCGAGATGGGAGCAGGGACCACTGCTTAGGCTGAAAGCAAAGTTGAAGATCTCTCAATCACGACCAATGGATGCTATTGAAACCTATAGGTACCTTCTTGCATTGGTTCAAGCTCAGAAGAAATCCTTTGGGTCTTTCCAAATTAGTTCAAAGGTTTTGGACGATAAAATAAATGAATTTGATATTTGGCATGGTCTGGCAAATTTATATGCTAGTCTTTCTCGTTGGAAGGATGCTGAAATCTGTCTGCAGAAGGCCAGGGACTTGAAGCAATACTCTGCAGCAGTAATGCACACTCAAGGTGTTTTGTCTGAAGGACGTGGGCAAAATGAGGAAGCTCTTCTTGCTACTATTAATGGTATACTATTTGAACCAAACCATGTTCCATGCAAGATCTTGATGGGTGCCATGATTCAAAGAGTGGGTCCAAAGTTTTTTTGTGCTGCAAGAAGCGCACTGTCTGATGCACTCCGAATAGAACCCACTAACCGCATGGCTTGGCATTGCTTGGGATTGCTTAACAAGCAAGATGGCCGAATAAGTGAAGCCGCTGACTGCTTCCAAGCAGCTTCCATGCTTGAAGAATCTGATCCCATCGAAACTTTCAGCTCTATTCTTTGA 2082 0.4299 MGSTEHGRVSVREFQANGSRIAASEVEAKLDQGNIQEAEDSLREGLSLNFEEARALLGKLEYQRGNLEGALRVFDGIDLQAAIQRLQSSSSEKPQGKKGRTQNESASGSQHAASLVLEAIYLKAKSLQKLGKFTEAADNCKRILDSVEKIFYQGVPNIQVDNKLQEIVSHAVELLPELWKQAGCYDEAISAYRRALLSQWNLDNDYCARIQKSFVMFLLYSGVEASPPSLAVQTEGSYVPKNNLEEAILLLMVLLRKFSLGKMKWDPSVMEHLTFALSICSQTSTLAKQIEELMPGVYHRIDCWNSLAFCYSGAGQNDCALSLLRKSLHKHERPNDLTSLLLAARICSEDSHLAAEGVIYAQRAVNNARDQNEHLKGVALRMLGLCLGKHAKVASSDSERSRLHSKALESLVAAIKLEPNNSDLIFELAVHYAQHRNLSNALRSARHFFNQTGGSMLKSWRLLALILSAQQRFSEAEVVTDAALDQTARWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQKKSFGSFQISSKVLDDKINEFDIWHGLANLYASLSRWKDAEICLQKARDLKQYSAAVMHTQGVLSEGRGQNEEALLATINGILFEPNHVPCKILMGAMIQRVGPKFFCAARSALSDALRIEPTNRMAWHCLGLLNKQDGRISEAADCFQAASMLEESDPIETFSSIL 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01576 693 PANTHER PROTEIN NPG1 8 690 IPR043376 -
Viun2g01576 693 Pfam Tetratricopeptide repeat 28 75 - -
Viun2g01576 693 SUPERFAMILY TPR-like 117 442 IPR011990 GO:0005515
Viun2g01576 693 SUPERFAMILY TPR-like 403 677 IPR011990 GO:0005515
Viun2g01576 693 Gene3D Tetratricopeptide repeat domain 236 534 IPR011990 GO:0005515
Viun2g01576 693 Gene3D Tetratricopeptide repeat domain 535 615 IPR011990 GO:0005515
Viun2g01576 693 Gene3D Tetratricopeptide repeat domain 17 201 IPR011990 GO:0005515
Viun2g01576 693 Gene3D Tetratricopeptide repeat domain 616 686 IPR011990 GO:0005515
Viun2g01576 693 SMART tpr_5 581 614 IPR019734 GO:0005515
Viun2g01576 693 SMART tpr_5 547 580 IPR019734 GO:0005515
Viun2g01576 693 SMART tpr_5 651 684 IPR019734 GO:0005515
Viun2g01576 693 SMART tpr_5 457 490 IPR019734 GO:0005515
Viun2g01576 693 SMART tpr_5 301 334 IPR019734 GO:0005515
Viun2g01576 693 SMART tpr_5 117 150 IPR019734 GO:0005515
Viun2g01576 693 MobiDBLite consensus disorder prediction 87 109 - -
Viun2g01576 693 SUPERFAMILY TPR-like 30 201 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01576 Viun-Chr2 25687784 25697921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01576 11 693 Calmodulin-binding Proteins AT2G43040 69.723 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01576 K21843 - gmx:100814609 1144.8