Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01569 ATGGCGGGGTCACTGACGCCAGGGGCCATAAAAGAAATATGCGGTGCCAATTGTTCCAGTAGTTTGAAACCAGTGTTGCAAGTTATAGATTTGAAGCTGGTGCAGTCGCAACAAGCCAATAACACCGAGAGGTACCGGCTGGTTCTATCTGACGGTTCCTTTTACCAGCAAGGCATGCTCGCCACGCAGATGAACGAACTAGTTCATTCTGCAAAGTTGCAGAAAGGTTCCGTCGTTAGGCTCACACAGTTCATCTGCAACGATGTCCAGAACCGCAAGATCATTGTCATCATTGACCTAGACGTTGTAGTGGAAAAGTGTGAGTTGATTGGAGAACCTGTTGCGTTACCAAAAGATGGATCTGCAGAATCGGGCACTGGTCAATCAGGAGTCACCCCTGGAAATTCACAATCTTTGAATAACCGTTCACACCCAGGCAGCATTTCTGCTAGACCGAATGTAGGCAGCATGCCTGCTAGACCGAATATGGCCGTACCATCTCCAGATCATCCAAGAATGAATGCTCCTGCCAGTAGTGTTTATTCTGGTATTTCCAACCCTGGATCTAGTTATTCTAGTAATGCACCTCCTACATATCCTAAAGTAGAACCCGGAGCTAATTTTTCTAGATCAGCACCATTTACTGGATCTCATGGTGATCAGAACATGGGTATTCGTCATCCCCAATCTGAGACTTCAAGGACCTTGCCAAACTCTTTTTCTCGTGCACCTCAGCCTATGTATCGGCAACCATCTCCAATGTACACTAACAGAGGGCCAATTGGAAAAAATGAAGCTCCCCCTAGGATAATTCCAATAGCAGCATTGAATCCTTACCAGAATATGTGGACAATTAAAGCCAGAGTAACAGCTAAGGGAGAACTCAGGCACTATAACAATGCTCGAGGTGATGGCAAGGTGTTTTCATTTGACCTTTTGGATTCTGATGGTGGGCAGATTCGGGCAACTTGCTTCAATAGTGTGGCTGATCAGTTCTATAATTTGATTGAAGCTGGTAAGGTATACCTAGTTTCCAGGGGAAGCATAAAGCCAGCTCAGAAGAATTTCAATCACCTTCCCAATGATCAAGAGTTAACCCTTGATATGACATCGATCATACAACCATGCCCTGATGATGATAACTCAATTCCAAAGCAGACTTTTAATTTTCGCCCCATTAGTGAAATTGAAAGTTTGGAAAGCAATACCATAGTGGATGTGATTGGTGTGGTGACTTCAATTAGCCCTACAGCTTCGATCATGAGAAAAAATGGTACTGAAACTCAGAAGAGAACACTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAGTTAACATTGTGGGGAAATTTTTGCAACGTGGAAGGACAAAGGCTGCAAAATATTTGTGATGATGGGAAATTTCCAGTTTTAGCTGCAAAAACTGTCAGAATTAATGATTTCAATGGAAAGTCTGTTGGGACTATAATGACTAGCCTACTGTTCGTAGAGCCTGATTTTCCAGAGGCTTACACACTGAAAAGATGGTTTGAAAATGAAGGGAAGAATGTTCCAACTCTCTCTATCTCCAGAGATACATCTAGTTTTCCTAAGAATGATAATCGGAAAACTGTATCTCAAATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCGGTCTGTGCAACTATTTCATACCTAAAGTGTGATAACTTCTGTTACCCAGGATGTCCTATCATGATAGGGGATAGACAATGTAACAAAAAAGTGACTAACAATGGTGATGGAAAATGGATTTGTGATAGGTGTAACCAATCTGTTGACGCTTGTGATTATAGGTACATACTGTCATTCCAGATAATGGATCACACAGGTGTAACATGGGTTACTGCTTTCCAGGAGAGTGGTGAGGAGATCATGGGCATGCCTGCAAAAGATTTGTATTATCTGAAGTATGAAGAGCAAGATGATGAAAGATTTGCTGAAATCATCCGGAAGGTTATCTTCACCGAGTACGTGTTCAAGTTGAAAGTAAAGGAGGAAACATTCAGTGATGAACAACGCGTTAAGTCAACTGTGGTTAAAGCAGAAAAGGTAAACTATGCATCTAAATCCAGAGTTAGTTTGGAATTGATTGATAAACTCTTGACTGGGAAATCAGAAGGTGCTACCACCGTTACCAACTCGTTATCCGGTAATACTGGAATGGGGACTGTTGAAACTGGTCAAGTAATGCCACCAGCTTATAACCCAATAAAGAGTAGCACTAATAGTAATAGAGATTTTGGGATGCCAGCAAATCAAGTGGGTCAACAACAATATGGAAACCAATATGGCAATTTTGGTTCAGCAGGTGCTGCTGGTGCATATACATCATGCACCAACTGTGGAGGTTCTGGTCATACTTCTATACTTTGCCCAAATGTTAGAAATGTGTCTGGACAGTCTTCAGGAGGGGGCTTTTCCAACAGGGCATCATATGGTGGATCAGGTGGTGGTGGTGGTGCTTCTGGTGAATGTTTTAAATGCCATCAACCTGGCCACTGGGCAAGAGACTGTCCTGGTTCCGGTGCAGCAACTGCTTCATATGGAAGCACTAATACAATGCATGGAAGATTTGGAGGATATTGA 2622 0.4264 MAGSLTPGAIKEICGANCSSSLKPVLQVIDLKLVQSQQANNTERYRLVLSDGSFYQQGMLATQMNELVHSAKLQKGSVVRLTQFICNDVQNRKIIVIIDLDVVVEKCELIGEPVALPKDGSAESGTGQSGVTPGNSQSLNNRSHPGSISARPNVGSMPARPNMAVPSPDHPRMNAPASSVYSGISNPGSSYSSNAPPTYPKVEPGANFSRSAPFTGSHGDQNMGIRHPQSETSRTLPNSFSRAPQPMYRQPSPMYTNRGPIGKNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGQIRATCFNSVADQFYNLIEAGKVYLVSRGSIKPAQKNFNHLPNDQELTLDMTSIIQPCPDDDNSIPKQTFNFRPISEIESLESNTIVDVIGVVTSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNVEGQRLQNICDDGKFPVLAAKTVRINDFNGKSVGTIMTSLLFVEPDFPEAYTLKRWFENEGKNVPTLSISRDTSSFPKNDNRKTVSQIKDEKLGTSEKPDWISVCATISYLKCDNFCYPGCPIMIGDRQCNKKVTNNGDGKWICDRCNQSVDACDYRYILSFQIMDHTGVTWVTAFQESGEEIMGMPAKDLYYLKYEEQDDERFAEIIRKVIFTEYVFKLKVKEETFSDEQRVKSTVVKAEKVNYASKSRVSLELIDKLLTGKSEGATTVTNSLSGNTGMGTVETGQVMPPAYNPIKSSTNSNRDFGMPANQVGQQQYGNQYGNFGSAGAAGAYTSCTNCGGSGHTSILCPNVRNVSGQSSGGGFSNRASYGGSGGGGGASGECFKCHQPGHWARDCPGSGAATASYGSTNTMHGRFGGY 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01569 873 NCBIfam replication factor-a protein 1 (rpa1) 241 710 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun2g01569 873 ProSiteProfiles Zinc finger CCHC-type profile. 837 851 IPR001878 GO:0003676|GO:0008270
Viun2g01569 873 SUPERFAMILY Nucleic acid-binding proteins 269 383 IPR012340 -
Viun2g01569 873 FunFam Replication protein A subunit 269 379 - -
Viun2g01569 873 Pfam Replication protein A OB domain 393 496 IPR031657 -
Viun2g01569 873 Pfam OB-fold nucleic acid binding domain 283 370 IPR004365 GO:0003676
Viun2g01569 873 Gene3D - 786 859 - -
Viun2g01569 873 FunFam Replication protein A subunit 4 117 - -
Viun2g01569 873 MobiDBLite consensus disorder prediction 115 253 - -
Viun2g01569 873 Gene3D - 269 379 IPR012340 -
Viun2g01569 873 PANTHER REPLICATION FACTOR A 1, RFA1 283 706 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun2g01569 873 CDD RPA1_DBD_A 272 374 - -
Viun2g01569 873 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Viun2g01569 873 CDD RPA1_DBD_B 404 511 - -
Viun2g01569 873 Pfam Replication factor-A C terminal domain 554 703 IPR013955 -
Viun2g01569 873 FunFam Replication protein A subunit 382 520 - -
Viun2g01569 873 SUPERFAMILY Nucleic acid-binding proteins 534 713 IPR012340 -
Viun2g01569 873 SMART c2hcfinal6 789 805 IPR001878 GO:0003676|GO:0008270
Viun2g01569 873 SMART c2hcfinal6 836 852 IPR001878 GO:0003676|GO:0008270
Viun2g01569 873 Pfam Zinc knuckle 836 851 IPR001878 GO:0003676|GO:0008270
Viun2g01569 873 MobiDBLite consensus disorder prediction 178 197 - -
Viun2g01569 873 CDD RPA1_DBD_C 538 711 IPR047192 -
Viun2g01569 873 FunFam Replication protein A subunit 521 712 - -
Viun2g01569 873 MobiDBLite consensus disorder prediction 210 252 - -
Viun2g01569 873 Gene3D - 3 116 IPR012340 -
Viun2g01569 873 SUPERFAMILY Nucleic acid-binding proteins 388 517 IPR012340 -
Viun2g01569 873 SUPERFAMILY Retrovirus zinc finger-like domains 821 853 IPR036875 GO:0003676|GO:0008270
Viun2g01569 873 Gene3D - 522 712 IPR012340 -
Viun2g01569 873 Gene3D - 381 521 IPR012340 -
Viun2g01569 873 MobiDBLite consensus disorder prediction 122 150 - -
Viun2g01569 873 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Viun2g01569 873 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01569 Viun-Chr2 25647664 25651328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01569 1 818 Core DNA Replication Machinery Family AT5G45400 50.626 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01569 K07466 - gmx:100778597 1284.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01569 2 25647664 25651328 Viun2g01569 2 25647664 25651328 ECH