Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01555 ATGGCCGATGCTTTAGTGGAAAGCGTGATTGAAAATTTGGGATCTCTAGTCAAAGACCAACTTGCAATTTACTGGGGTGTTGATGAGCAGACTAAGAAGCTTTCCAGCAATCTGAAAGCAATCCGTGCTGTTCTCAGAGACGCTGAGAGAAAACAAATAACAAGCTATGCAGTGAAGGATTGGCTGCAGAAACTCACAGATGCAGCATATGTGCTTGATGATATCTTGGATGAATGTTCAATTCACTCCACAAAGATGCACTCTGTTGATGGTCATACTTCACGCCTATCCCGTCTCCATCCTAAGGACATTCTCTTCCGTTTTCATATCGGAAAGAGGATGAGAGACATCACCCAGAGATTTCACAGCATTCATGAAGAAAGGCTCACTTTTGAATTACGTGAGAGTGTCACAGAAAAGCAAGCCGTTGATGATGATGATTGGCGCAAAACTAGTTCTGACATTACAGAACCTATAGTCTATGGCAGAGACCAGGGTCGAGAGCAAATTTTGAAGTTTCTTTTAGAAGATGCTAGTGACAGTGAAGACCTCTCCATCTATCCCATAGTTGGCATGGGTGGGCTTGGCAAAACAACACTTGCGAAGCAGGTCTTCAATGATGACAGGGTATGCAAACATTTTGACTTGACAATTTGGGTCTGTGTTTCTGATGATTTCAACACTAAGGCAATACTACAATCCATCATAGAATGTATCACTGGACAAAATCCCAATCTCAATAGCTTAGAAGCAATGCGGAAAAAGGTTGAAGAAGCATTGCACAACAAGAGGTATTTACTTGTTCTTGATGATGTGTGGAATGAAGATCAAGAGAAATGGAAGGAGTTGAAGGGGAAGTTGCAGTGTGCAAGGGGAGCCAAAGGAGCTACCATTTTGGTCACTACTCGACTTGAGGAAGTTGTCTCCATCATGGGAACACATTCTGCTTACCGTTTGACAGCGTTATCAGAAGATGACAGTTGGTCATTGTTCAAACACCATGCGTTTGGACCAAACAGAGAAGAAAGCGAAGAGCTTGTGACAATCGGCAAAGAGATAATGAGGAAATGCGTCGGTTCGCCACTTGCAATCAAAACCCTGGCTAGCTGTTTGCGTGATGAAAGTGAGGTAAGCCAATGGGAAAATGTAAAGAAAAGCGAAATTTGGAATATACGAGAAGAAAGTAGTTCTGTGACAGGTGATGAAAATTCTATTATGCGTGTTTTGAAATTGAGCTATTCTAATTTGAAGTCGTCTGTGAAGAGATGTTTTTCTTTTTGTGCAATATTCCCCAAAGATTGGGAGATAAAAAAGGAAGAAGTAATTCATCTCTGGATGGCTAATGGATTTATTAAATGCGAAGGAGATGTAGAAGTGGAGGATGTTGGAAATAAAGTGTGGAAAAAATTATATAGTAGATCCTTTTTTCAAGAAGCAAAGTATGATGAATTTGGTATGATCACAACTTTCAAGATGCATGATCTATTTCATGATCTTGCCCAATCTATTATGGGCGAGGAATGTGTGGTTATTGTGGAAGGAAGGTTGACCCCATTGTCAACTAGAGTTCACTATTCAAGCTTGTTAAATTCTGGTGTTTCTGTTGATGTGTCTGATTTCAGGCAAAGATTTATGACTGTTTTGAAGAAAGTTGAATCTCTGCGTACTTTTCTTGATATTGGTGGTATTGGCCGTGTGCCAACAAACCATTGTCTCCAAGCATTGCAAACAAGCTCTTCTTTGTTGTCCCCGCTCAAGGATTTAACACATTTGAGATACTTGAGTTTGAGTTGGAATTCGGAAGCAAGCTTAAATAACTCAATTTGTCACTTGCCAAAATTGCAAATATTGAAACTGCAACATCTGAGACATCTTTATGGACTACCCAAAGACTTGACACAATTACAGGATCTAAGACATATTGTGATTATTGAATGTCCTTCAATAGTAGAAATGCCTCCCAAAATTAGCAAGTTAAGGCATCTAAGAACACTGAGCATTTTTGTTGTGGGTTCAAAACCAGGATGTGGGTTAGCGGAGTTGCATAGTTTAAAACTTGGAGGCACACTGAGAATTAGAGGCCTTGAAAACGTCTCCAACGAATGGGATGCTAAAGAAGCAAATTTGAAGAGCAAGAAGGATTTGAATCGCCTGCACTTGTCATGGGATGGTAGTGCTAATTCAAAAGGTAATAATGTTAGTGCAGAGATAATATTGGAAGCCTTGGAGCCTCCCTCAACTCTGAAGAGTTTTGGGATGAATGGATATGAAGGAAGACGGTTATCAAATTGGATGAGAAGTGTTGTAGTTCTGAAAGACTTGGTGGAAGTTAAGCTCTTCAACTGTGACAACTGTGAGGAGCTTCCTCCACTAGGTAAACTGCCACACTTGAAAAGGCTAGTGGTGAGTGGAATGAAAAATGTGAAGTGGATAGATGGTGAGACCTATGACGGCGTGGAGGAGAAGGCATTTCCATCATTGGAGAAATTGAGTGTGGAGAATTTACCAAATTTGGAGAGGTTGTTGAGGGATGAAGGAGTAGAGATGCTCCCTCGTCTTTCCCAATTAACAATTTTTGGCGTCTCCAACCTTAAATTTCCACGTCTTCCTTCTGTTGAGATACTTCTTGCTAGAAGCATTGACGAAGTGACTATGGAAGGGGTTGTGGGGAATATGACTTGTCTAAAGACCTTGGACATTCAAATCATTAACGGAGCGGTGGTATTACCCGACCAACTCAGTGGGTTGGATGCACTACAGGACCTACGCGTTGGTTATTGGAATGATTTGGAGTACTTCCCAGAACATGTGTTGGAAGGTCTAACTTCTCTTCGAACTTTGTCTATTAGTTACTGTCATAAATTAAAATCCTTATCTGAAGGTGTTGGACATTTGGCTCGTCTTGAGAGTTTGTCTATCCGCTATTGTCCAGAGTTGATGGATCTACCAAGCAATATGAGCCAACTAACTACCCTTTGGAAGGTCTCAATCGCGGGTAGCTCGTCATTACCGTATGGCTTACAACGTGCCCCCTCCCTACGAACTTTGAATATAACATTTTGCAAATGTACTTCATTGCCGGATTGGCTGGGAGACATCACTTCTCTTCAACAATTAAGCATTGACTATTGTATGGAGTTGAGGTCACTGCCGAGTAGCATTCAACGCCTCACCAACTTGTCTTCTTTACGTATATACAATTGTTCTCATCTGGAGAAGCGGTGCAAGAGGGAAACAGGAGAGGATTGGCAATACATAAACCACATTCCAAAAATAGAACTACATTTCCCGAAGAAACCGACTTTTTGTGCTTAA 3315 0.4109 MADALVESVIENLGSLVKDQLAIYWGVDEQTKKLSSNLKAIRAVLRDAERKQITSYAVKDWLQKLTDAAYVLDDILDECSIHSTKMHSVDGHTSRLSRLHPKDILFRFHIGKRMRDITQRFHSIHEERLTFELRESVTEKQAVDDDDWRKTSSDITEPIVYGRDQGREQILKFLLEDASDSEDLSIYPIVGMGGLGKTTLAKQVFNDDRVCKHFDLTIWVCVSDDFNTKAILQSIIECITGQNPNLNSLEAMRKKVEEALHNKRYLLVLDDVWNEDQEKWKELKGKLQCARGAKGATILVTTRLEEVVSIMGTHSAYRLTALSEDDSWSLFKHHAFGPNREESEELVTIGKEIMRKCVGSPLAIKTLASCLRDESEVSQWENVKKSEIWNIREESSSVTGDENSIMRVLKLSYSNLKSSVKRCFSFCAIFPKDWEIKKEEVIHLWMANGFIKCEGDVEVEDVGNKVWKKLYSRSFFQEAKYDEFGMITTFKMHDLFHDLAQSIMGEECVVIVEGRLTPLSTRVHYSSLLNSGVSVDVSDFRQRFMTVLKKVESLRTFLDIGGIGRVPTNHCLQALQTSSSLLSPLKDLTHLRYLSLSWNSEASLNNSICHLPKLQILKLQHLRHLYGLPKDLTQLQDLRHIVIIECPSIVEMPPKISKLRHLRTLSIFVVGSKPGCGLAELHSLKLGGTLRIRGLENVSNEWDAKEANLKSKKDLNRLHLSWDGSANSKGNNVSAEIILEALEPPSTLKSFGMNGYEGRRLSNWMRSVVVLKDLVEVKLFNCDNCEELPPLGKLPHLKRLVVSGMKNVKWIDGETYDGVEEKAFPSLEKLSVENLPNLERLLRDEGVEMLPRLSQLTIFGVSNLKFPRLPSVEILLARSIDEVTMEGVVGNMTCLKTLDIQIINGAVVLPDQLSGLDALQDLRVGYWNDLEYFPEHVLEGLTSLRTLSISYCHKLKSLSEGVGHLARLESLSIRYCPELMDLPSNMSQLTTLWKVSIAGSSSLPYGLQRAPSLRTLNITFCKCTSLPDWLGDITSLQQLSIDYCMELRSLPSSIQRLTNLSSLRIYNCSHLEKRCKRETGEDWQYINHIPKIELHFPKKPTFCA 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01555 1104 Gene3D - 321 412 IPR042197 -
Viun2g01555 1104 SUPERFAMILY RNI-like 825 1072 - -
Viun2g01555 1104 Gene3D - 5 117 - -
Viun2g01555 1104 CDD RX-CC_like 2 124 IPR038005 -
Viun2g01555 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 427 IPR027417 -
Viun2g01555 1104 Gene3D Ribonuclease Inhibitor 548 870 IPR032675 -
Viun2g01555 1104 Pfam NB-ARC domain 167 415 IPR002182 GO:0043531
Viun2g01555 1104 PANTHER DISEASE RESISTANCE PROTEIN RP 34 832 IPR044974 GO:0006952
Viun2g01555 1104 Gene3D - 150 316 IPR027417 -
Viun2g01555 1104 FunFam Probable disease resistance protein At1g63360 413 502 - -
Viun2g01555 1104 Gene3D Ribonuclease Inhibitor 998 1081 IPR032675 -
Viun2g01555 1104 Gene3D Ribonuclease Inhibitor 871 997 IPR032675 -
Viun2g01555 1104 Pfam Rx N-terminal domain 5 88 IPR041118 -
Viun2g01555 1104 Coils Coil 31 51 - -
Viun2g01555 1104 SUPERFAMILY L domain-like 476 916 - -
Viun2g01555 1104 Gene3D - 413 503 IPR036388 -
Viun2g01555 1104 PRINTS Disease resistance protein signature 939 955 - -
Viun2g01555 1104 PRINTS Disease resistance protein signature 357 371 - -
Viun2g01555 1104 PRINTS Disease resistance protein signature 186 201 - -
Viun2g01555 1104 PRINTS Disease resistance protein signature 259 273 - -
Viun2g01555 1104 FunFam Probable disease resistance protein At1g61300 143 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01555 Viun-Chr2 25601916 25607202 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01555 914 1073 WRKY Transcription Factor Family AT4G12020 27.500 5.72e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01555 - - vum:124833357 1670.21