Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01547 ATGGCCGAGGCTTTAGTAGAAAGCGTGATTGAAAATTTGGGATCTTTAGTTAAAGACCAACTTGCAATTTATTGGGGTGTTGATGAGCAGACTGAGAAGCTTTCCAGCAATCTGAAAGCAATCCGTGCTGTTCTCAGAGATGCAGAGAGAAAACAAATAACAAGCTATGCAGTGAAGGATTGGCTGCAGAAACTCACAGATGCAGCATATGTGCTTGATGATATCTTGGATGAATGTTCTATTCACTCCACAAAGATGCACTTTGTTGATGGTCATACATCACTCCTATCCCGTCTCCATCCTAAGGACATTCTCTTCCGTTTCCATATCGGAAAGAGGATGAGAGAAATCACCCAGAGATTTCACAGCATTCATGAAGAAAGGCTCACCTTTGAATTACGTGTGAGTGTCACAGAAGAGCAAACCGTGGATGATGATGATTGGCGCCAAACTAGCTCTGTCATTACTGAACCCATATTATATGGCAGAGACGAAGATAGAGAGAAAATTGTGAAGTTTCTCCTCAAAGATGCTAATAACAATGAAGACCTCACCGTTTATCCCATAGTTGGTATGGGTGGACTTGGCAAAACAACTCTTGCCAAGCAGGTCTTCAATGATCACGAGATAAGTAAACATTTTGACTTGAGAATTTGGATATGCGTTTCAGACGATTTCAATTTGAAGAGAATACTACAATCCATCATAGAATGTTGCATTGGTCAAAATCCCAACCTTGGTGATTTAGAAGCAAGGCGGAAAAAGGTCGAAGAAGCATTGCACAACAAGAGGTATTTGCTTGTTCTTGATGATGTGTGGAACGAAAACCCAGAGAAATGGAAGGAGTTGAAGGGGATGTTGGAATGTGCAAGGGGAGCAAAAGGAGCTACCATTTTGGTCACTACTCGACTTGAGGAAGTTGTCTCCATCATGGGAACACATTCTGCTTACCGTTTGACAGCGTTATCAGAAGATGACAGTTGGTCATTGTTCAAACACCATGCGTTTGGACCAAACAGAGAAGAAAGGGAAGAGCTCGTGACAATCGGCAAAGAGATAATGAGGAAATGCGTTGGTTCGCCACTTGCAATCAAAACCCTTGCAAGCTGTTTGCGTGATGAAAGTGAGGTAAGCCAATGGGAAAATGTAAAGAAAAGCGAAATTTGGAATATACGAGAAGAAAGTAGTTCTGTGACAGGTGATGAAAATTCTATTATGCGTGTTTTGAAATTGAGCTATTCTAATTTGAAGTCGTCTGTGAAGAGATGTTTTTCTTTTTGTGCAATTTTCCCCAAAGATTTTGAAATAGAAAAGGAAGAACTTATTCATCTCTGGATGGCTAATGGATTTATTAAATGCGAAGGAGATGTAGAAGTGGAGGATGTTGGAAATAAAGTGTGGAGAAAATTATATAGTAGATCCTTTTTCCAAGAAGCAAAGTATGATGAATTTGGTATGATCACAAGTTTCAAGATGCATGATCTATTTCATGATCTTGCCCAATCTATTATGGGTGAGGAATGTGTGGTTATTGAAGCTTCAAGTATGACTATGTTGTCAGCCAGAGTTCACTATTCAAGCTTGTTTAGTTCTGACTTCCTTTTTGATCGGCCTGCATTCAGTCGTCGACTCATGCCTGCTTTCAAGAAAGTTGAATCCTTGCGTACTTTTCTTGATTTTTGTCATATTAGCTCGGGGCCATCAAATCATTATCTTCGAGCATTATGCTTAAGACCTATTCCTTATTTTTCCCCATACAAGGATTTAGCAAACAAGGATTTAGCACATTTGAGATACTTGAGTTTGTCTTTTTGTTTCGAAAAAGCATGCTTAAATAGCATAATTTGTCAGATGCCGAAATTGCAAATATTGAAACTGAACTCTTGTACCGAAGTTGAGCTACCCAAAAACTTGACACAATTACAGGATTTAAGACATGTTTTGATTGATGATTGCGCTTCAATAGCAGAAATGCCTCCCAATATTAGCAAGTTAAGGCATCTAAGAACACTTGGCATTTTCGTTGTGGGTTCAAAGCCAGGGTGTGGGTTAGGGGAGCTGCAGAGTTTAAAGTTGGGTGGCACACTGAGAATCAAAGGCCTTGAGAACGTCTCCAGTGAATGGGATGCTAAACAAGCAAATTTGATTGGTAAAAACTTGAATATGCTATGGTTGTCATGGGATGGTAGAAGTAGTTCAGAAGGTAGTAATGTTAGTGTGGAGAGAGTACTGGAAGCCCTAGAACCTCCCTCGACTCTGAAGAGTTTTCAGATGAATGGATATGAGGGAAGACACTTATCGAGTTGGATGAGAAGTTTGGTAGCTCTGAGAGACTTGGTGGAAGTTAAGGTCTTGGAATGTGACAACGTTGAGGAGCTTCCTCCACTTGGTAAACTAGCACAATTGAAAAGGCTAGAGGTGAGTGGAATGAAAAATGTGAAGTGCATAGATGGTGAGACGTATGAGGGCGTGGAGGAGAAGGCATTTCCATCGTTGGAGGAATTGATTCTGAAGAATTTACCAAATTTGGAGAGGTTGTTGAGGGATGAAGGAGTAGAGATGCTCCCTCGTCTTTCCCAATTAACAATTAAAAAGGTCTCCAACTTTAAATTCCCACGTCTTCCTTCTGTTGAGAAACTTGATGTTGAAAGCATTGACGATGTGGAAGGGGTTGTGGGGAATACGCCTTGTCTAAAGACCCTGAAGATTTCATCAATTAAAGGAGTAAAGACACTACCTGACCAACTCGGCACGCTGGATGCATTAGAGGTCCTTGAGATTGAATTTTGGTATGATTTGGAGTATTTTCCAGAACATGTGTTGGAAGGTCTAACTTCTCTTCGAACTTTGGAGATTCGTCACTGTGAGAAATTAAAATCCTTGTCTGAAGGTGTTCGACATTTGGCATGTCTTGAGAGTTTGACGATCAGAGAATGTCCAGAGTTGATGGTTCTACCAAGCAATATGAGCCAACTAACCGCCCTTCGAGTCGTGGCAATCGAGTATTGCTCGACATTACCAGATGGCTTACAACGTGTCCCCTCCCTACGTTCTTTGTATATATCCGAGTACAAGTCTACTTCATTGCCGGACTGGCTGGGAGATATATCTACTCTTGAAGAATTAATCTTTAATTACTGTAGGGAGTTGAGGTCACTGCCGAGTAGCATTCAACGCCTCACCAACTTGTCTCGTTTAATCATAGGCGGATGTCCTCATCTGCAGAAGCGGTGCAAGAGGGAAACAGGAGAGGATTGGCAATACATAAACCACATTCCAAATATAAAACTATATGGATTTTAA 3303 0.4087 MAEALVESVIENLGSLVKDQLAIYWGVDEQTEKLSSNLKAIRAVLRDAERKQITSYAVKDWLQKLTDAAYVLDDILDECSIHSTKMHFVDGHTSLLSRLHPKDILFRFHIGKRMREITQRFHSIHEERLTFELRVSVTEEQTVDDDDWRQTSSVITEPILYGRDEDREKIVKFLLKDANNNEDLTVYPIVGMGGLGKTTLAKQVFNDHEISKHFDLRIWICVSDDFNLKRILQSIIECCIGQNPNLGDLEARRKKVEEALHNKRYLLVLDDVWNENPEKWKELKGMLECARGAKGATILVTTRLEEVVSIMGTHSAYRLTALSEDDSWSLFKHHAFGPNREEREELVTIGKEIMRKCVGSPLAIKTLASCLRDESEVSQWENVKKSEIWNIREESSSVTGDENSIMRVLKLSYSNLKSSVKRCFSFCAIFPKDFEIEKEELIHLWMANGFIKCEGDVEVEDVGNKVWRKLYSRSFFQEAKYDEFGMITSFKMHDLFHDLAQSIMGEECVVIEASSMTMLSARVHYSSLFSSDFLFDRPAFSRRLMPAFKKVESLRTFLDFCHISSGPSNHYLRALCLRPIPYFSPYKDLANKDLAHLRYLSLSFCFEKACLNSIICQMPKLQILKLNSCTEVELPKNLTQLQDLRHVLIDDCASIAEMPPNISKLRHLRTLGIFVVGSKPGCGLGELQSLKLGGTLRIKGLENVSSEWDAKQANLIGKNLNMLWLSWDGRSSSEGSNVSVERVLEALEPPSTLKSFQMNGYEGRHLSSWMRSLVALRDLVEVKVLECDNVEELPPLGKLAQLKRLEVSGMKNVKCIDGETYEGVEEKAFPSLEELILKNLPNLERLLRDEGVEMLPRLSQLTIKKVSNFKFPRLPSVEKLDVESIDDVEGVVGNTPCLKTLKISSIKGVKTLPDQLGTLDALEVLEIEFWYDLEYFPEHVLEGLTSLRTLEIRHCEKLKSLSEGVRHLACLESLTIRECPELMVLPSNMSQLTALRVVAIEYCSTLPDGLQRVPSLRSLYISEYKSTSLPDWLGDISTLEELIFNYCRELRSLPSSIQRLTNLSRLIIGGCPHLQKRCKRETGEDWQYINHIPNIKLYGF 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01547 1100 SUPERFAMILY RNI-like 831 1076 - -
Viun2g01547 1100 Gene3D - 321 412 IPR042197 -
Viun2g01547 1100 Gene3D - 144 316 IPR027417 -
Viun2g01547 1100 Gene3D - 5 114 - -
Viun2g01547 1100 Gene3D Ribonuclease Inhibitor 546 883 IPR032675 -
Viun2g01547 1100 CDD RX-CC_like 2 124 IPR038005 -
Viun2g01547 1100 SUPERFAMILY L domain-like 491 866 - -
Viun2g01547 1100 FunFam Probable disease resistance protein At1g63360 413 502 - -
Viun2g01547 1100 PANTHER DISEASE RESISTANCE PROTEIN RP 35 843 IPR044974 GO:0006952
Viun2g01547 1100 Pfam NB-ARC domain 165 415 IPR002182 GO:0043531
Viun2g01547 1100 Pfam Rx N-terminal domain 5 87 IPR041118 -
Viun2g01547 1100 Gene3D Ribonuclease Inhibitor 884 982 IPR032675 -
Viun2g01547 1100 Gene3D Ribonuclease Inhibitor 985 1084 IPR032675 -
Viun2g01547 1100 Coils Coil 31 51 - -
Viun2g01547 1100 Gene3D - 413 503 IPR036388 -
Viun2g01547 1100 FunFam Probable disease resistance protein At1g61300 143 316 - -
Viun2g01547 1100 PRINTS Disease resistance protein signature 186 201 - -
Viun2g01547 1100 PRINTS Disease resistance protein signature 357 371 - -
Viun2g01547 1100 PRINTS Disease resistance protein signature 259 273 - -
Viun2g01547 1100 PRINTS Disease resistance protein signature 942 958 - -
Viun2g01547 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 427 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01547 Viun-Chr2 25539495 25543496 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01547 183 673 WRKY Transcription Factor Family AT5G45050 22.909 7.80e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01547 - - vum:124833357 1566.98