Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01544 ATGGAGAGGTACAACTTAATTAAGGAAGTTGGTGATGGGACTTTTGGGAGTGTGTGGAGAGCTATAAACAAACAGACTGGTGAAGTTGTTGCTATCAAGAAGATGAAGAAGAAGTATTACTCTTGGGAGGAGTGTGTAAACCTAAGAGAAGTCAAGTCGTTGCGAAAAATGAACCACCCAAATATTGTCAAGCTGAAGGAAGTTATTCGAGAAAGTGACATTTTGTACTTTGTTTTTGAATACATGGAATGCAACCTATACCAGCTTATGAAAGATAGGGAAAAACTGTTTTCTGAAGGTGAAGTTAGGAATTGGTGTTTTCAAGTTTTCCAAGGTCTTGCTTACATGCACCAGCGTGGATACTTCCATCGTGACCTGAAGCCCGAAAACTTGCTGGTTACCAAGGATATCATCAAAATTGCTGATTTTGGCCTAGCCCGAGAGATCACTTCACAACCACCCTACACTGAATATGTCTCCACACGATGGTACCGTGCTCCTGAAGTGTTGCTTCAGTCTTATATGTATACTTCTAAAGTTGACATGTGGGCAATGGGTGCTATAATGGCTGAGCTTTTCTCTCTACGTCCCCTTTTCCCAGGTGTCAGTGAAGCAGATGAGATATACAAAATATGTGGTGTGATAGGCAGTCCAACTCATGAATCTTGGGATGATGGACTCAAGCTTGCAAGGGACATCAACTACCAATTTCCGCAGCTTGCCGGTGTGCATCTTTCTGCACTGATCCCGTCTGCAAGCGATGATGCAATCAGCCTTATCACATCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACAGCTTCCGAGGCCCTTCAGCATCCTTTCTTTCAGAGTTGCTTCTATATTCCTCCATCCCTTCGCAGCAGAGCAGTAGCCAGAACTCCACCATCCGCTGGAACCAGAGGAGCGCTGGATCATCAAGGGGTCAAGAGATATTCCGGTGCTTTATCCAATTCAAAGGCCACCAATAATTTTTCTTCCCAGAAATTACATCCTCCTTTAGCTTCAGGTGTGCAACGGAAGCTGGATATGGTAAATCAGGATGGAATTAAGAATGAAAAACCTATGAGGAGTACTAAACCAAAGTATCGACAGCCAGGAAAGGACAGCCCAACATCTATGAACAAGGGGAGGTATGCACGTGGGGTTTCAGAAGCAGCTGAGAAATTGGGCAATTTGTCTGTTAGTAGTAGAAGACAATCAATGGGACATCCCCGTCCTCCACCAATGAAGGCTGGAGTGAATTGGATGTCTGAATCTGGAAACTTCATCCTTGGATCCGCCCAGCAGATTCAGACTGGAAGAACTTTCACCAGAAAAGTTGCCGGATGA 1353 0.4472 MERYNLIKEVGDGTFGSVWRAINKQTGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRESDILYFVFEYMECNLYQLMKDREKLFSEGEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAREITSQPPYTEYVSTRWYRAPEVLLQSYMYTSKVDMWAMGAIMAELFSLRPLFPGVSEADEIYKICGVIGSPTHESWDDGLKLARDINYQFPQLAGVHLSALIPSASDDAISLITSLCSWDPCKRPTASEALQHPFFQSCFYIPPSLRSRAVARTPPSAGTRGALDHQGVKRYSGALSNSKATNNFSSQKLHPPLASGVQRKLDMVNQDGIKNEKPMRSTKPKYRQPGKDSPTSMNKGRYARGVSEAAEKLGNLSVSSRRQSMGHPRPPPMKAGVNWMSESGNFILGSAQQIQTGRTFTRKVAG 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01544 450 FunFam cyclin-dependent kinase F-4-like 1 83 - -
Viun2g01544 450 SMART serkin_6 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01544 450 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 334 - -
Viun2g01544 450 MobiDBLite consensus disorder prediction 324 422 - -
Viun2g01544 450 FunFam serine/threonine-protein kinase MAK isoform X1 84 293 - -
Viun2g01544 450 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Viun2g01544 450 SUPERFAMILY Protein kinase-like (PK-like) 1 287 IPR011009 -
Viun2g01544 450 MobiDBLite consensus disorder prediction 324 340 - -
Viun2g01544 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Viun2g01544 450 Pfam Protein kinase domain 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01544 450 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Viun2g01544 450 MobiDBLite consensus disorder prediction 353 371 - -
Viun2g01544 450 CDD STKc_MAK_like 4 283 - -
Viun2g01544 450 Gene3D Transferase(Phosphotransferase) domain 1 84 289 - -
Viun2g01544 450 ProSiteProfiles Protein kinase domain profile. 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01544 Viun-Chr2 25522812 25530195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01544 1 290 Core Cell Cycle Gene Families AT3G48750 37.584 3.89e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Viun2g01544 Pkinase 7e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01544 K08829 - gmx:100810150 859.366