Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01543 ATGGAGAGGTACAACTTAATTAAGGAAGTTGGTGATGGGACTTTTGGGAGTGTGTGGAGAGCTATAAACAAACAGACTGGTGAAGTTGTTGCTATCAAGAAGATGAAGAAGAAGTATTACTCTTGGGAGGAGTGTGTAAACCTAAGAGAAGTCAAGTCGTTGCGAAAAATGAACCACCCAAATATTGTCAAGCTGAAGGAAGTTATTCGAGAAAGTGACATTTTGTACTTTGTTTTTGAATACATGGAATGCAACCTATACCAGCTTATGAAAGATAGGGAAAAACTGTTTTCTGAAGGTGAAGTTAGGAATTGGTGTTTTCAAGTTTTCCAAGGTCTTGCTTACATGCACCAGCGTGGATACTTCCATCGTGACCTGAAGCCCGAAAACTTGCTGGTTACCAAGGATATCATCAAAATTGCTGATTTTGGCCTAGCCCGAGAGATCACTTCACAACCACCCTACACTGAATATGTCTCCACACGATGGTATGTGTCATTCACTTTCAATAGATGTTTCACATTCTGTTTTAGGTGTGCAATAACATGCGTGACTGCCTTCCTGTTTAGGTACCGTGCTCCTGAAGTGTTGCTTCAGTCTTATATGTATACTTCTAAAGTTGACATGTGGGCAATGGGTGCTATAATGGCTGAGCTTTTCTCTCTACGTCCCCTTTTCCCAGGTGTCAGTGAAGCAGATGAGATATACAAAATATGTGGTGTGATAGGCAGTCCAACTCATGAATCTTGGGATGATGGACTCAAGCTTGCAAGGGACATCAACTACCAATTTCCGCAGCTTGCCGGTGTGCATCTTTCTGCACTGATCCCGTCTGCAAGCGATGATGCAATCAGCCTTATCACATCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACAGCTTCCGAGGCCCTTCAGCATCCTTTCTTTCAGAGTTGCTTCTATATTCCTCCATCCCTTCGCAGCAGAGCAGTAGCCAGAACTCCACCATCCGCTGGAACCAGAGGAGCGCTGGATCATCAAGGGGTCAAGAGATATTCCGGTGCTTTATCCAATTCAAAGGCCACCAATAATTTTTCTTCCCAGAAATTACATCCTCCTTTAGCTTCAGGTGTGCAACGGAAGCTGGATATGGTAAATCAGGATGGAATTAAGAATGAAAAACCTATGAGGAGTACTAAACCAAAGTATCGACAGCCAGGAAAGGACAGCCCAACATCTATGAACAAGGGGAGGTATGCACGTGGGGTTTCAGAAGCAGCTGAGAAATTGGGCAATTTGTCTGTTAGTAGTAGAAGACAATCAATGGGACATCCCCGTCCTCCACCAATGAAGGCTGGAGTGAATTGGATGTCTGAATCTGGAAACTTCATCCTTGGATCCGCCCAGCAGATTCAGACTGGAAGAACTTTCACCAGAAAAGTTGCCGGATGA 1434 0.4435 MERYNLIKEVGDGTFGSVWRAINKQTGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRESDILYFVFEYMECNLYQLMKDREKLFSEGEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAREITSQPPYTEYVSTRWYVSFTFNRCFTFCFRCAITCVTAFLFRYRAPEVLLQSYMYTSKVDMWAMGAIMAELFSLRPLFPGVSEADEIYKICGVIGSPTHESWDDGLKLARDINYQFPQLAGVHLSALIPSASDDAISLITSLCSWDPCKRPTASEALQHPFFQSCFYIPPSLRSRAVARTPPSAGTRGALDHQGVKRYSGALSNSKATNNFSSQKLHPPLASGVQRKLDMVNQDGIKNEKPMRSTKPKYRQPGKDSPTSMNKGRYARGVSEAAEKLGNLSVSSRRQSMGHPRPPPMKAGVNWMSESGNFILGSAQQIQTGRTFTRKVAG 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01543 477 CDD STKc_MAK_like 4 310 - -
Viun2g01543 477 MobiDBLite consensus disorder prediction 351 367 - -
Viun2g01543 477 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Viun2g01543 477 SMART serkin_6 4 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01543 477 FunFam cyclin-dependent kinase F-4-like 1 83 - -
Viun2g01543 477 MobiDBLite consensus disorder prediction 380 398 - -
Viun2g01543 477 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 357 - -
Viun2g01543 477 Gene3D Transferase(Phosphotransferase) domain 1 84 316 - -
Viun2g01543 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Viun2g01543 477 ProSiteProfiles Protein kinase domain profile. 4 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01543 477 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Viun2g01543 477 Pfam Protein kinase domain 4 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01543 477 Pfam Protein kinase domain 190 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01543 477 MobiDBLite consensus disorder prediction 351 449 - -
Viun2g01543 477 SUPERFAMILY Protein kinase-like (PK-like) 2 316 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01543 Viun-Chr2 25522812 25530195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01543 1 317 Core Cell Cycle Gene Families AT3G48750 34.462 1.96e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Viun2g01543 Pkinase 3.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01543 K08829 - gmx:100810150 844.728