Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01517 ATGTCTGCAAACTTAAACTACGGCATGCCCTTTACTCATCCTCACTGGTTCTCACCAAATTCTGGAATTTACCATAGCAAGCATGCCCCTATGGACCTTCCCAGCGACCCTTTTCTCGATGTTGTTTCCTTCATTTTTTCCCACCGCCATGATGGGGTTTCGGCCCTCGTTGATTCCTCATCAGGGTGTTCCATTTCCTACTCAAAGTTGCTACCTTTGGTCAAATCCGTTGCCTCTGGTCTTTACAAAATGGGTGTTTCGAAAGGTGATGTGGTTCTGATTCTTCTTCCCAATTCCATTTACTATCCCATTGTGTTCCTGGGAGTTCTCTATCTGGGAGCTATTGTCACACCGCTGAACCCTCTTAGCAGTGTCTATGAAATACGCAGGCAGGTTGCTGAGTGTGGTGTGAGTGTGGCTTTTACTCTGCCTGAGAATTTTAAGAAACTAGAGCCATTGGGAATTTCTGTTATTGCTGTGCCGGAAAATGAGAAGGGTTTGAGACATGGTTGTTTTTCATGCTTTTGTGACTTGATTTCTTGTGACTTTGATTTGCCTCAGAGGCCTGTTATCAAGCAGGATGACGCTGCTGGGATATTGTATTCCTCAGGTACTACTGGGGTGAGCAAAGGGGTTGTTCTGTCCCATAAAAATCTTATTGCTATGGTTGAGCTCTTTGTGAGGTTTGAAGCTTCTCAGTATGAAAGTTCTTGCTTGAGGAATGTGTATCTGGCTGTTTTGCCAATGTTCCATGTGTATGGCTTGTCGCTATTTGCAGTGGGATTGTTGTCTCTGGGTTCTACTGTTGTTGTGATGAGGAAATTTGACATAGATGAGGTTGTCAGGGTGATTGATGAATATAAAGTTACACATTTTCCCGTTGTTCCGCCGATGTTGACAGCATTGATAACGAGGGCAAATGGTGTTAATGACAGTAAGTTGCAGAGTTTGATACAGGTCTCCAGTGGTGCAGCGCCTTTGAGCTCAGGAGTTGTTGATGATTTTCTTCGAACTTTTCCCGATGTTGATTTTATACAGGGTTATGGAATGACTGAGTCAACAGCCGTAGGAACACGTGGCTTCAATACTGAAAAGTTTCGAAATTATTCTTCAATAGGGTTATTGGCTCCAAACATGGAGGCAAAAGTGGTAGACTGGAATACTGGTGCATTTTTGCCCCCTGGCAGCAGTGGTGAACTTTGGTTGAGAGGGCCTTCAATTATGACGGGGTACTTGAACAATGAGGAAGCTACAATGTCCACAATTGATAGAGATGGCTGGCTACATACTGGAGATGTTGTTTATTTTGATAATGATGGATACTTATACATAGCTGATCGATTGAAAGATATCATCAAATACAAGGGCTTTCAGATTGCTCCGGCTGATTTAGAAGCTGTGTTAATTTTGCATCCTGAAATAGTTGATGTTGCTGTTATAGGTGCTATGGATGAAGAAACTGGTGAGATTCCAGTGGCCTTTGTGGTAAGAAAGTTTGGAAGTGTGCTGTCTCCGAAGCATGTTATGGATTATGCTGCTAAGCAGGTTGCTCCATATAAGAAGATTAGGAAAGTGTTCTTCACCAGCAAGATACCTAGGTCTGCGACTGGGAAGATCCTTAGAAAGCAACTGAGGAATTGCTTGATTTCTAAACTATGA 1659 0.4298 MSANLNYGMPFTHPHWFSPNSGIYHSKHAPMDLPSDPFLDVVSFIFSHRHDGVSALVDSSSGCSISYSKLLPLVKSVASGLYKMGVSKGDVVLILLPNSIYYPIVFLGVLYLGAIVTPLNPLSSVYEIRRQVAECGVSVAFTLPENFKKLEPLGISVIAVPENEKGLRHGCFSCFCDLISCDFDLPQRPVIKQDDAAGILYSSGTTGVSKGVVLSHKNLIAMVELFVRFEASQYESSCLRNVYLAVLPMFHVYGLSLFAVGLLSLGSTVVVMRKFDIDEVVRVIDEYKVTHFPVVPPMLTALITRANGVNDSKLQSLIQVSSGAAPLSSGVVDDFLRTFPDVDFIQGYGMTESTAVGTRGFNTEKFRNYSSIGLLAPNMEAKVVDWNTGAFLPPGSSGELWLRGPSIMTGYLNNEEATMSTIDRDGWLHTGDVVYFDNDGYLYIADRLKDIIKYKGFQIAPADLEAVLILHPEIVDVAVIGAMDEETGEIPVAFVVRKFGSVLSPKHVMDYAAKQVAPYKKIRKVFFTSKIPRSATGKILRKQLRNCLISKL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01517 552 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Viun2g01517 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 18 546 - -
Viun2g01517 552 FunFam 4-coumarate--CoA ligase 2 450 551 - -
Viun2g01517 552 FunFam Long-chain-fatty-acid--CoA ligase FadD 25 449 - -
Viun2g01517 552 SUPERFAMILY Acetyl-CoA synthetase-like 50 548 - -
Viun2g01517 552 Pfam AMP-binding enzyme 50 454 IPR000873 -
Viun2g01517 552 CDD 4CL 33 544 - -
Viun2g01517 552 Gene3D - 22 449 IPR042099 -
Viun2g01517 552 Pfam AMP-binding enzyme C-terminal domain 464 538 IPR025110 -
Viun2g01517 552 Gene3D - 450 549 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01517 Viun-Chr2 25392345 25396732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01517 14 552 Monolignol Biosynthesis Gene Families AT4G19010 59.779 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01517 K01904 - gmx:100804808 983.4