Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01510 ATGGGTCGGAAACACGACGCCGTTTTGGTCAGCGAACCAGTCGCCGAAGAAGCACCCTACAGCCCCGAGCTCGATTCCGAGAAGAAGAAGAAGAAGAAAAAGAAGAACAAGAACAAAGACAAGCAGCAAGAAAGCGAAAACAGCCCCAAACGAAAACTCGACGAACTCGACCCGCAAAACGGCACCGAATCGAAGAAGAAGAAAAAGAAGAAACACCACGACTCCAAAGAGAGTGTAGAGGAAACCAACGGTGATAGGAACAACGACAACGGCGCTAATCGCGATGAGACGGTGGCGGACGGGTCTGTAGTGGTTACTGGAAAGAATGCCGGAGATGCGAAGTACGCGGCGGTAAAAAGCTTTTCGGATTCTGGGCTGCCGGAGAATGTATTGGAGTGTTGCAAGGGTTTCGAGAAGCCTTCTCCAATTCAATCGCGGGCGTGGCCTTTCTTACTGGACCGCCGTGATTTGATTGGAATCGCTGCCACTGGATCAGGGAAAACGTTGGCGTTCGGGATACCAGCGATTATGCATGTTTTGGGGAAGCGGAAGGGTAAAGGTTCCAGGGGGCGGAACCCTCTTTGCCTCGTGCTCTCTCCTACTCGAGAGCTAGCACAACAAATATCAGATGTCATCTGTGATGCTGGTAGTTCTTGTGGTGTTGAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGCCCACAAATCTCCTCACTAAAATCTGGCATTGACATTGTCATTGGAACTCCTGGTCGTATTCAGGATCTAATTGAAATGGGTGTCTGTTGCCTCAAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAATAGTCCGCTCTATACTGGGTCAGACAAATTCTGATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGGCAGTTCATCAGTTGGCTCAGGAGTTTATGGATCCCGATCCAGTAAAAGTTGTTGTAGGTTCAGAAGACTTGGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGACGATCGTGCTCGTGATAGGCGCCTGGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGCAATCGAGTATTGGTCTTTGTTTTGTACAAAAATGAAGCCAAACGAGTTGAAAATATGCTTCAAGAAGGGGGTTTGAAGGTTGTTTCGATACATGGGGACAAAGCCCAACATGATCGCACAAAGGCACTCTCATTGTTCAAAAAGGGAAGCTGTCCTTTAATGGTTGCTACTGATGTGGCTGCACGGGGATTGGATATTCCAGATGTTGAAGTAGTGATAAACTATAGTTTTCCTCTGACTACAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTGAGGGAAGCAGGGCAAGTTGTACCCGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTACGGGGCGCACTTCAAGGAAATCCCTGTTGGTGCTCCAAAGTCTCAAAAGAAAACATTTGACTCTGACGATGAAGACTAA 1614 0.4696 MGRKHDAVLVSEPVAEEAPYSPELDSEKKKKKKKKNKNKDKQQESENSPKRKLDELDPQNGTESKKKKKKKHHDSKESVEETNGDRNNDNGANRDETVADGSVVVTGKNAGDAKYAAVKSFSDSGLPENVLECCKGFEKPSPIQSRAWPFLLDRRDLIGIAATGSGKTLAFGIPAIMHVLGKRKGKGSRGRNPLCLVLSPTRELAQQISDVICDAGSSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTNSDRQMVMFSATWPLAVHQLAQEFMDPDPVKVVVGSEDLAANHDVMQIVEVLDDRARDRRLVALLEKYHKSQSNRVLVFVLYKNEAKRVENMLQEGGLKVVSIHGDKAQHDRTKALSLFKKGSCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQVVPDALLKFGTHVKKKESKLYGAHFKEIPVGAPKSQKKTFDSDDED 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01510 537 SMART ultradead3 136 342 IPR014001 -
Viun2g01510 537 Pfam Helicase conserved C-terminal domain 353 462 IPR001650 -
Viun2g01510 537 MobiDBLite consensus disorder prediction 39 64 - -
Viun2g01510 537 FunFam ATP-dependent RNA helicase RhlB 328 505 - -
Viun2g01510 537 Gene3D - 58 327 IPR027417 -
Viun2g01510 537 SMART helicmild6 381 462 IPR001650 -
Viun2g01510 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 475 IPR027417 -
Viun2g01510 537 Coils Coil 24 44 - -
Viun2g01510 537 MobiDBLite consensus disorder prediction 74 93 - -
Viun2g01510 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 501 IPR001650 -
Viun2g01510 537 Gene3D - 328 504 IPR027417 -
Viun2g01510 537 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 49 497 - -
Viun2g01510 537 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 271 279 IPR000629 -
Viun2g01510 537 CDD DEADc 135 326 - -
Viun2g01510 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 325 IPR014001 -
Viun2g01510 537 MobiDBLite consensus disorder prediction 1 102 - -
Viun2g01510 537 Pfam DEAD/DEAH box helicase 142 311 IPR011545 GO:0003676|GO:0005524
Viun2g01510 537 CDD SF2_C_DEAD 339 471 - -
Viun2g01510 537 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 145 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01510 Viun-Chr2 25333143 25337582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01510 118 470 Eukaryotic Initiation Factors Gene Family AT3G19760 33.521 4.51e-57 194