Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01485 ATGGGTTACGAAGACGATCCGTACCGCGACGAGGACGGTGAGCCCTTGATGGATTACGATGACATTCAATCTGACCGCGAGCCCTCTCCGGAGCCGCGCCACCAGCTCGACGATTACGGGGATGATGTCAACGACGAGTGGCAGGGCCGGGATCGGTCGCAGACGCCGGTGTACGACAACGATTCGGCGCGCTCGAAGCCGCGGAAGAGGCTGATCAAGAAGAGCGATGCGGGGAAGCAGTCGGTGGCGCCGGAGCTCGAGGATGAGGATGAGGGATATGTTCCTGAGGCGAGGTTTGACGAGGGGGATGGAAGGAAGAGGAAGAAGGGAAAGGAGGTTGGGAGTGGGAAGAAGGAGAAAAGGCTGAAGGGTGAGAAGAGATTTGGTGGTGGCAGTGGCTCTAAATTTGGGGGTTCTAAAAAAGGTTTCGGTGGTAAGGCTGGGAAGGATCATGATGGTGAAGTTGAGGAGATGTGGGATTCAATTGCTGGGGGTAATTCTGAGGATGATCACGAAGGTGTCAGGAATCTGGATGATGACAACTTTATAGATGACACTGGAGTGGAACCTGCTTATTATGGTAGTGATGAACCACGTTCTCCTGGTGATGCTCCTCAGGCAGAGGAAGGTGAAGAAGATGAAGAGATCAAGGATCTTTTCAAGATAGGGAAGAAAAAGAAAAAGAACGAGAGGAGTCCAGCTGAAATAGCATTATTAGTGGAGAATGTCATGGCCGAACTTGAGGTTACAGCTGAAGAAGATGCAGATCTTAATAGGCAGGGGAAACCTGCCATTAATAAACTCAAGAAGTTGCCTCTTCTCACAGAAGTCCTCTCGAAGAAGCAGCTCCAACTAGAGTTTTTAGATCATGGAGTCCTGACTTTGTTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGCTTACCCAATATAAATATTCGCACGGAAATTTTGAAGATATTGAATGATTTTCCTATAGACCTAGAGCAATATGATAGAAGAGAACAATTGAAGAAGAGTGGCCTTGGAAAAGTCATTATGTTTTTATCAAAATCTGATGAAGAAATCAGTGTAAACCGGAAACTAGCCAAGGAGCTGGTTGACAAGTGGAGCCGGCCTATATTTAATAAGAGTACCCGATTTGAAGACATGAGAAATGTAGAGGATGATAGGGTTCCTTTTAGGAGACCATCGCTAAAGAAGCCAACTAATAAAGCTGCAGGAATATCGAGAGATAGCGATCTTGATCTGGAAATTTCACAACCTAGGGCTGGACAATCCTCCTCCAGGCAGCACGCTTCGAGACCGGAAGCGACACCTTTAGATTTTGTCATACGACCCCAGTCCAAAATTGATCCAGAAGAGATTAGAGCTCGGGCAAAACAAGCTGCCCAAGACCAGCAGCGTATGAAGATGAATAAAAAATTGCAGCAGTTAAGAGCACCCAAAAAGAGGCAGCTTCAGGCTACAAAATTAAGTGTGGAGGGTCGTGGAATGGTCAAATATTTGTAA 1512 0.4702 MGYEDDPYRDEDGEPLMDYDDIQSDREPSPEPRHQLDDYGDDVNDEWQGRDRSQTPVYDNDSARSKPRKRLIKKSDAGKQSVAPELEDEDEGYVPEARFDEGDGRKRKKGKEVGSGKKEKRLKGEKRFGGGSGSKFGGSKKGFGGKAGKDHDGEVEEMWDSIAGGNSEDDHEGVRNLDDDNFIDDTGVEPAYYGSDEPRSPGDAPQAEEGEEDEEIKDLFKIGKKKKKNERSPAEIALLVENVMAELEVTAEEDADLNRQGKPAINKLKKLPLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTEILKILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEISVNRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRVPFRRPSLKKPTNKAAGISRDSDLDLEISQPRAGQSSSRQHASRPEATPLDFVIRPQSKIDPEEIRARAKQAAQDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMVKYL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01485 503 ProSiteProfiles TFIIS N-terminal domain profile. 294 377 IPR017923 -
Viun2g01485 503 Pfam TFIIS helical bundle-like domain 319 374 IPR017923 -
Viun2g01485 503 MobiDBLite consensus disorder prediction 19 49 - -
Viun2g01485 503 MobiDBLite consensus disorder prediction 97 128 - -
Viun2g01485 503 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 233 380 IPR035441 -
Viun2g01485 503 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 289 377 IPR035441 -
Viun2g01485 503 MobiDBLite consensus disorder prediction 393 450 - -
Viun2g01485 503 PANTHER PROTEIN IWS1 HOMOLOG 1 1 503 IPR044204 GO:0009742|GO:0032784
Viun2g01485 503 MobiDBLite consensus disorder prediction 144 182 - -
Viun2g01485 503 MobiDBLite consensus disorder prediction 420 435 - -
Viun2g01485 503 MobiDBLite consensus disorder prediction 1 18 - -
Viun2g01485 503 MobiDBLite consensus disorder prediction 1 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01485 Viun-Chr2 25170492 25174226 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Viun2g01485 Med26 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01485 K17498 - gmx:100801805 818.92