Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01462 ATGTATGGGGATTGCCAAGTTATGTCAAGTATGGGAGGGAACGTAGTAGTGAACTCCGATACTCTCTTTTCCTCCTCGATCCAGAACTCTAACTTCAACTTCATCCCCACCATGCCTTTTCAACCTTTTCCTTCCATGCAGAAGGAAGAAGATGTGATGCTGCGAGGGAAGGAAGAGATGGAGAGTGGGTCGGGAAGTGAACAGGTTGAAGATAAGTCAGGGAATGAACAAGAGAGTGAACAACCCACAAAGAAGAAACGCTATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCTCACCCAGATGATAAACAGAGGCTGAAACTGAGCCATGAATTGGGCCTGAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCACAACAAGATCGTGCAGATAATATCATACTTAGAGCCGAGAATGAGACTCTAAAGAGTGAGAACTATCGTCTACAAGCTGCACTGCGTAACGTTATGTGTCCCAATTGTGGTGGCCAATGCATAATGGGTGCTGATCTGGGTTTGGATGAACACCAACTTCGCATGGAAAATGCCCGGTTAAGAGAAGAGTTAGAACGCGTGTGTTGCCTCACTTCAAGGTACACTGGGCGTTCATTACAAACAATGACAGCAGGTCCAACTCTCATGGCCCCTTCATTGGATTTGGATATGAACATATATCCAAGGCACTATTCGGATCCTGTTGCTCCGTGCACAGAAATGATTCCTGTGCCAATGTTGCCTCCCGAAGCTTCACCATTTGCGGAGGGTGGAGGAATCTTGATGGAAGAAGAAAAGTCTCTGGCCTTAGAGCTCGCGGCTTCTTCCATGGCAGAACTTGTGAAGATGTGTCAGACAAACGAGCCGCTTTGGATCCGAAGCAGTGATGGTGAAAGGGAAGTGTTGAATTTCGAAGAGCACGCAAGGATATTTCCTTGGCCTCAGAATCTCAAGCAGCGAAGTGAACTGAGAACTGAAGCTAGCCGTGACACTTCTGTGGTTATAATGAACAGCGTCACTCTTGTTGACGCGTTCCTTGATGGTCAAAAATGGATGGAATTGTTTCCAACAATCGTGTCTCGAGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCTGGTCATGCAAGCGGGACTCTTCAGCTGATGTACGCAGAATTTCAAGTTCTTTCTCCATTGGTGTCCACTCGCGAGACTCATTTTCTTCGTTATTGTCAACAAAATGCTGAGGAAGGAACCTGGGCCATTGTTGATTTTCCTGTTGACAACTTTCACCAAAATTTTCACCCTTCTTATCCCAAATACTGCAGGAGATCCTCTGGTTGCGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAATAGAAGAGAAACCCGTGCATCAGATATTCAGCAACTATGTATACAGTGGAATGGCATTCGGAGCACAGCGTTGGTTAGGAGTTTTGCAGAGACAATGCGAGAGGGTCGCGAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCGCCAGAAGCGCGAAAGAACTTGATGAAACTAGCCCAAAGAATGATAAAAACGTTTGGCCTTAACATGAGTACCTCTGGGGGTCAATCGTGGACAGCTATATCAGATTCCCCTGAAGACACAGTTAGAATCACAACAAGGAAAGTCACAGAGCCTGGTCAACCTAATGGTGTGATTCTAAGTGCTGTTTCAACCACTTGGTTGCCCTATTCTCATACCAAGGTCTTTGATCTCCTCAGGGACGAACGTCACAGATCTCAGATGGATGCTCTTTCCAACGGGAACTCATTGAATGAGGTGGCTCACATTGCAAATGGTTCACATCCAGGAAACTGCATTTCACTTCTTCGCATAAATGTAGCAAGCAACTCATCCCAGAACGTAGAGCTAATGCTGCAAGAGAGTTGCACCGACCAGTCTGGAAGCTTGGTGGTGTACACCACCATTGATGTGGATTCGATCCAGCTAGCCATGAGTGGCGAGGACCCTTCTTGCATTGCCCTTCTCCCCCAAGGCTTCATGATAGTGCCGATGCTATCATCACCCAACGTTGACACACCCATCAATGCTAACTCCTCAGAGCCTCCATCTCTCAACCCAGGTTGCCTCCTAACCATGGGGCTGCAAGTTCTCGCCAGCACAATCCCTTCTGCAAAGCTCAACCTCTCGAGTGTCACGGCCATCAACAACCACCTCTGCAACACCTTGCACCAAATCGAAGCTGCTCTTTCCAGTAGCAGTGAGAATGGCACCAATTTCCTTTGCACTGAACCCACTTCCAGTGCACCTCCAAAGCAGTGA 2379 0.4729 MYGDCQVMSSMGGNVVVNSDTLFSSSIQNSNFNFIPTMPFQPFPSMQKEEDVMLRGKEEMESGSGSEQVEDKSGNEQESEQPTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRADNIILRAENETLKSENYRLQAALRNVMCPNCGGQCIMGADLGLDEHQLRMENARLREELERVCCLTSRYTGRSLQTMTAGPTLMAPSLDLDMNIYPRHYSDPVAPCTEMIPVPMLPPEASPFAEGGGILMEEEKSLALELAASSMAELVKMCQTNEPLWIRSSDGEREVLNFEEHARIFPWPQNLKQRSELRTEASRDTSVVIMNSVTLVDAFLDGQKWMELFPTIVSRAKTVQIISSGASGHASGTLQLMYAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDNFHQNFHPSYPKYCRRSSGCVIQDMPNGYSRVTWVEHAKIEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFGLNMSTSGGQSWTAISDSPEDTVRITTRKVTEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCIALLPQGFMIVPMLSSPNVDTPINANSSEPPSLNPGCLLTMGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEAALSSSSENGTNFLCTEPTSSAPPKQ 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01462 792 Pfam Homeodomain 85 140 IPR001356 GO:0003677
Viun2g01462 792 CDD START_ArGLABRA2_like 280 509 - -
Viun2g01462 792 SUPERFAMILY Bet v1-like 277 512 - -
Viun2g01462 792 SUPERFAMILY Homeodomain-like 76 143 IPR009057 -
Viun2g01462 792 Pfam START domain 286 510 IPR002913 GO:0008289
Viun2g01462 792 Gene3D - 332 498 IPR023393 -
Viun2g01462 792 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Viun2g01462 792 ProSiteProfiles START domain profile. 276 513 IPR002913 GO:0008289
Viun2g01462 792 SMART HOX_1 83 146 IPR001356 GO:0003677
Viun2g01462 792 MobiDBLite consensus disorder prediction 48 92 - -
Viun2g01462 792 SMART START_1 285 510 IPR002913 GO:0008289
Viun2g01462 792 SUPERFAMILY Bet v1-like 528 766 - -
Viun2g01462 792 FunFam Homeobox-leucine zipper protein HDG1 72 158 - -
Viun2g01462 792 CDD homeodomain 85 143 IPR001356 GO:0003677
Viun2g01462 792 MobiDBLite consensus disorder prediction 50 85 - -
Viun2g01462 792 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Viun2g01462 792 Gene3D - 70 152 - -
Viun2g01462 792 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 81 769 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01462 Viun-Chr2 25011479 25016622 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01462 8 772 Homeobox Transcription Factor Family AT5G46880 57.419 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun2g01462 START 2.1e-39 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01462 - - gmx:100812829 1420.6