Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01460 ATGGTGGAAAGAAGAGTGACTTTATCTAAGGAAGTTAGGAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCTGTCACTGCCACCCAAACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGGGATTCAGCATCATGTGGCATGAGATTGCATGGCAATGCTGATGTCTTTTCCAAACGAAAGGTGGATAAGTTTGATACAAATGACCTGGACTGGACTGAAACAATTCCAGAGTGTCCTGTGTATTCCCCAACAAAGGAGGAATTTGAGGATCCTTTGATTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCTCCTTTGAGCGCTTCAGTACCTGCTGGGGTTGTATTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCTCTTCGCCTTGCTGAATGGGATTCTGAAGACAAAGTCACGTTTTTTATGAGTGGAAGAAATTATACATTTCGTGATTTTGAGAAAATGGCAAACAAGGTATTTGCTAGAAGATATTGCAGTGCTGGATGCCTTCCTGCCACATACTTGGAAAAAGAATTTTGGAATGAAATTGGTTGTGGGAAGATGGAAACTGTGGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCATTGATCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCAAGGTTGCCCAAATCAAGTTTACGGCTCTTGGAAACATTAATTCCGGGAGTAACCGAGCCCATGTTGTACATTGGAATGCTGTTCAGCATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGCATTAATTATCATCACTGTGGCGCATCCAAAACATGGTACGGTATTCCAGGTCACGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTACACTAATGACATTTTATCAAGTGATGGGGAAGATGGTGCATTTGATGTTCTCCTGGGGAAAACAACTCTATTTCCACCGAATATTTTGTTAGAGCATGAAGTTCCTGTCTACAAGGCTGTTCAAAAGCCTGGGGAGTTTATAATAACCTTCCCTAGAGCATATCATGCTGGTTTCAGTCATGGTTTCAATTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCCTTAGGGGCTATTGCTAGCAGAAGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTCCGTACATGCTTGGAACTTGAAGATTCGGATTTTCTCTCTTCAGACTCTCTTTCTCATAATAGCATTAAGATTTCATTTGTTAACTTGATGCGATTCCAGCATTGCGCGCGATGGTTTCTAACGAAATCAAGGGCTTGTATAAGCGTCTTTTCTCATTCCCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGTTACGTAGCTTATCTTGATTGCAACTGTCATATACATCCTGTATGCCTACGTCACGATGTTGATTCTCTTGACTTCACCTGTGGGAGCAAACACACACTTAATTTGAGGGAGGATATTATGGATATGGAAGCGGCAGCCAAGATGTTTGAGCAGGAAGATGGGATATCACATGAGATAAGGAAACAAATCAATAGTGGCCAAAACATGTATGCGTATCCTTTGTCAAACATGTTTCAGAGAGCCGAGGCAAATGGATACATTCCTTATTGTGAGCTAAAACTTGATTCTGTTGTTGAATTTTATACAACTCCAGAGCACTCAACAAATATTCAAGAATACAGTACACAGAATCAATCTGTCTTTGTACATTGCTCTGAAAATCAAATACCCATGGTGTCTGACGTTTCCTTTTCTTCAGCCACATCCACTATTTCTGAATCCCTCGAGAGCTTCTCTACTCCCAAAAATGCTGAAGGGCATACTAATATCAATTTAGGAGGTAGTATTGATTTTGAGGGTTTTGGTGAAAGAATTCCCAACAGTGCGTGTGAATCTTCGTTATCCCCTGCTGTGTGCCATGAAAGCTCGATTAAACCACAGAGTGGTTTTCAGAGAGTTGATACAAAGCCCATCGCGGACGAGAGTGATTCTGATTCAGAGATATTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCAGAGAGGAGAAATATGAATGATGTCACGTCTTCAAAGCAGACTGAGCAGCAGATTTTGCTATATGAATGGGCCATGATGATATTGTAA 2259 0.4081 MVERRVTLSKEVRNGLEFLKRKRLQRAQSVTATQTNIANMMNRSGGDALRDSASCGMRLHGNADVFSKRKVDKFDTNDLDWTETIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDSEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWNEIGCGKMETVEYACDVDGSAFSSSPIDQLGNSKWNLKKLSRLPKSSLRLLETLIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFLSSDSLSHNSIKISFVNLMRFQHCARWFLTKSRACISVFSHSHGTILCSLCKRDCYVAYLDCNCHIHPVCLRHDVDSLDFTCGSKHTLNLREDIMDMEAAAKMFEQEDGISHEIRKQINSGQNMYAYPLSNMFQRAEANGYIPYCELKLDSVVEFYTTPEHSTNIQEYSTQNQSVFVHCSENQIPMVSDVSFSSATSTISESLESFSTPKNAEGHTNINLGGSIDFEGFGERIPNSACESSLSPAVCHESSIKPQSGFQRVDTKPIADESDSDSEIFRVKRPSSLKAERRNMNDVTSSKQTEQQILLYEWAMMIL 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01460 752 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Viun2g01460 752 SMART JmjN_1 87 128 IPR003349 -
Viun2g01460 752 SMART cupin_9 232 405 IPR003347 -
Viun2g01460 752 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Viun2g01460 752 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Viun2g01460 752 FunFam Lysine-specific demethylase isoform A 83 432 - -
Viun2g01460 752 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 631 - -
Viun2g01460 752 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Viun2g01460 752 Gene3D Cupin 88 446 - -
Viun2g01460 752 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Viun2g01460 752 Pfam jmjN domain 89 121 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01460 Viun-Chr2 24983949 24989629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01460 85 423 JUMONJI Transcription Factor Family AT1G30810 36.409 2.34e-62 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun2g01460 JmjC 1.5e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01460 - - gmx:100798611 1298.49