Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01459 ATGGTGGAAAGAAGAGTGACTTTATCTAAGGAAGTTAGGAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCTGTCACTGCCACCCAAACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGGGATTCAGCATCATGTGGCATGAGATTGCATGGCAATGCTGATGTCTTTTCCAAACGAAAGGTGGATAAGTTTGATACAAATGACCTGGACTGGACTGAAACAATTCCAGAGTGTCCTGTGTATTCCCCAACAAAGGAGGAATTTGAGGATCCTTTGATTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCTCCTTTGAGCGCTTCAGTACCTGCTGGGGTTGTATTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCTCTTCGCCTTGCTGAATGGGATTCTGAAGACAAAGTCACGTTTTTTATGAGTGGAAGAAATTATACATTTCGTGATTTTGAGAAAATGGCAAACAAGGTATTTGCTAGAAGATATTGCAGTGCTGGATGCCTTCCTGCCACATACTTGGAAAAAGAATTTTGGAATGAAATTGGTTGTGGGAAGATGGAAACTGTGGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCATTGATCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCAAGGTTGCCCAAATCAAGTTTACGGCTCTTGGAAACATTAATTCCGGGAGTAACCGAGCCCATGTTGTACATTGGAATGCTGTTCAGCATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGCATTAATTATCATCACTGTGGCGCATCCAAAACATGGTACGGTATTCCAGGTCACGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTACACTAATGACATTTTATCAAGTGATGGGGAAGATGGTGCATTTGATGTTCTCCTGGGGAAAACAACTCTATTTCCACCGAATATTTTGTTAGAGCATGAAGTTCCTGTCTACAAGGCTGTTCAAAAGCCTGGGGAGTTTATAATAACCTTCCCTAGAGCATATCATGCTGGTTTCAGTCATGGTTTCAATTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCCTTAGGGGCTATTGCTAGCAGAAGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTCCGTACATGCTTGGAACTTGAAGATTCGGATTTTCTCTCTTCAGACTCTCTTTCTCATAATAGCATTAAGATTTCATTTGTTAACTTGATGCGATTCCAGCATTGCGCGCGATGGTTTCTAACGAAATCAAGGGCTTGTATAAGCGTCTTTTCTCATTCCCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGTTACGTAGCTTATCTTGATTGCAACTGTCATATACATCCTGTATGCCTACGTCACGATGTTGATTCTCTTGACTTCACCTGTGGGAGCAAACACACACTTAATTTGAGGGAGGATATTATGGATATGGAAGCGGCAGCCAAGATGTTTGAGCAGGAAGATGGGATATCACATGAGATAAGGAAACAAATCAATAGTGGCCAAAACATGTATGCGTATCCTTTGTCAAACATGTTTCAGAGAGCCGAGGCAAATGGATACATTCCTTATTGTGAGCTAAAACTTGATTCTGTTGTTGAATTTTATACAACTCCAGAGCACTCAACAAATATTCAAGAATACAGTACACAGAATCAATCTGTCTTTGTACATTGCTCTGAAAATCAAATACCCATGGTGTCTGACGTTTCCTTTTCTTCAGCCACATCCACTATTTCTGAATCCCTCGAGAGCTTCTCTACTCCCAAAAATGCTGAAGGGCATACTAATATCAATTTAGGAGGTAGTATTGATTTTGAGGGTTTTGGTGAAAGAATTCCCAACAGTGCGTGTGAATCTTCGTTATCCCCTGCTGTGTGCCATGAAAGCTCGATTAAACCACAGAGTGGTTTTCAGAGAGTTGATACAAAGCCCATCGCGGACGAGAGTGATTCTGATTCAGAGATATTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCAGAGAGGAGAAATATGAATGATGTCACGTCTTCAAAGCAGACTGAGCAGCAGGGACTAAAACGACTGAAGAAAGTGCTTCCTGAAGGAAGGAGTGATCAACCAATGGATTTCAGAACTCAGGAGTTAAGTTACAAACACAGTCACCCTGTTAGCCATAAAAGTCGTGTTGAAGTCTCCTCCAGGGACAGATTTGCAAGGGGTAATGGCATCCCCATTTCGATAAGATATAAGAAGTTTGGGAACGAGGAAATAAATATGCAACGAGATCACCACCAACACCGGAAAGATAGGTTCTTGCAGCAACAGACATTTAGGGAACCGCCTTCCGTTGAGATTGAGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCTTTTTTAGGCTTAGAGAGCAGATTGAATTGA 2571 0.4142 MVERRVTLSKEVRNGLEFLKRKRLQRAQSVTATQTNIANMMNRSGGDALRDSASCGMRLHGNADVFSKRKVDKFDTNDLDWTETIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDSEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWNEIGCGKMETVEYACDVDGSAFSSSPIDQLGNSKWNLKKLSRLPKSSLRLLETLIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFLSSDSLSHNSIKISFVNLMRFQHCARWFLTKSRACISVFSHSHGTILCSLCKRDCYVAYLDCNCHIHPVCLRHDVDSLDFTCGSKHTLNLREDIMDMEAAAKMFEQEDGISHEIRKQINSGQNMYAYPLSNMFQRAEANGYIPYCELKLDSVVEFYTTPEHSTNIQEYSTQNQSVFVHCSENQIPMVSDVSFSSATSTISESLESFSTPKNAEGHTNINLGGSIDFEGFGERIPNSACESSLSPAVCHESSIKPQSGFQRVDTKPIADESDSDSEIFRVKRPSSLKAERRNMNDVTSSKQTEQQGLKRLKKVLPEGRSDQPMDFRTQELSYKHSHPVSHKSRVEVSSRDRFARGNGIPISIRYKKFGNEEINMQRDHHQHRKDRFLQQQTFREPPSVEIEPKRLKVRGPSFLGLESRLN 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01459 856 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Viun2g01459 856 SMART JmjN_1 87 128 IPR003349 -
Viun2g01459 856 SMART cupin_9 232 405 IPR003347 -
Viun2g01459 856 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Viun2g01459 856 MobiDBLite consensus disorder prediction 686 710 - -
Viun2g01459 856 Gene3D Cupin 88 446 - -
Viun2g01459 856 Pfam jmjN domain 89 121 IPR003349 -
Viun2g01459 856 FunFam Lysine-specific demethylase isoform A 83 432 - -
Viun2g01459 856 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Viun2g01459 856 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Viun2g01459 856 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 760 - -
Viun2g01459 856 Pfam C5HC2 zinc finger 485 536 IPR004198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01459 Viun-Chr2 24983288 24989626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01459 85 544 JUMONJI Transcription Factor Family AT2G34880 32.468 4.72e-62 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun2g01459 JmjC 1.9e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01459 - - gmx:100798611 1464.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01459 2 24983288 24989626 Viun2g01459 2 24983288 24989626 ECH