Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun2g01444 | ATGAGCTTTCAGGACATCGAGGCTGGACGGCCTTTCGCTTCCCGGCGCAACGGCAAACAGGACCCTACGCAAGCGGTGGCTTCCGGCATATTTCAGATCAACACCGCCGTCTCCACGTTCCAGCGACTCGTCAACACGCTCGGAACCCCCAAGGACACGCCCGAACTCCGCGAGAAGTTGCATAAGACAAGACTGCACATTGGACAACTGGTGAAGGATACGTCGAATAAACTTAAGCAAGCTAGTGAGATCGATCACAATGCTGAAGTTAATGCGAATAAGAAGATAGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCGGTGTTGAAAGAGTTTCAGAAGGCTCAGCGTCTTTCAGCTGAGAGGGAAACAGCTTACACACCTTTTGTTCCACAAGCAGTTCTTCCATCCAGCTATACAGCTGGCGAAGTAGCCATTAGTTCTGATAAGACTCCAGAACAGCGGGCCCTTCTTGTGGAATCTAGGAGACAGGAAGTGTTATTCTTAGATAATGAGATTGCATTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCATCAGCAAATTGGTGAAGTGAATGAGATTTTCAAAGATCTTGCCGTTCTTGTCCATGAGCAAGGAGCAATAATTGATGATATTGGCACCAATATTGAGAATTCTCATGAAGCAACTGCACGAGCAAAATCTCAACTTGCCAAAGCATCAAAGACGCAAAGATCAAATTCATCTTTGACGTGCTTGCTTTTGGTGATATTTGGGATCGTGCTTCTAATCGTCATCATTGTCCTTGCTGCTTAG | 813 | 0.4588 | MSFQDIEAGRPFASRRNGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSNKLKQASEIDHNAEVNANKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQAVLPSSYTAGEVAISSDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIHQQIGEVNEIFKDLAVLVHEQGAIIDDIGTNIENSHEATARAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA | 270 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun2g01444 | 270 | SMART | SynN_4 | 10 | 124 | IPR006011 | GO:0016020 | |
Viun2g01444 | 270 | SUPERFAMILY | t-snare proteins | 20 | 232 | IPR010989 | GO:0016020|GO:0016192 | |
Viun2g01444 | 270 | CDD | SNARE_Qa | 180 | 238 | - | - | |
Viun2g01444 | 270 | ProSitePatterns | Syntaxin / epimorphin family signature. | 183 | 222 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Viun2g01444 | 270 | Pfam | Syntaxin-like protein | 27 | 126 | IPR006011 | GO:0016020 | |
Viun2g01444 | 270 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 177 | 239 | IPR000727 | - | |
Viun2g01444 | 270 | FunFam | Syntaxin-22 like | 17 | 130 | - | - | |
Viun2g01444 | 270 | Pfam | SNARE domain | 214 | 265 | IPR000727 | - | |
Viun2g01444 | 270 | FunFam | Syntaxin-22 like | 170 | 270 | - | - | |
Viun2g01444 | 270 | Gene3D | - | 171 | 270 | - | - | |
Viun2g01444 | 270 | PANTHER | SYNTAXIN | 23 | 262 | IPR045242 | - | |
Viun2g01444 | 270 | CDD | SynN | 20 | 144 | IPR006011 | GO:0016020 | |
Viun2g01444 | 270 | SMART | tSNARE_6 | 172 | 239 | IPR000727 | - | |
Viun2g01444 | 270 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Viun2g01444 | 270 | Gene3D | - | 13 | 130 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun2g01444 | Viun-Chr2 | 24870529 | 24873922 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun2g01444 | 1 | 258 | SNARE and Associated Proteins | AT5G46860 | 78.846 | 1.25e-149 | 417 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun2g01444 | - | - | gmx:100810149 | 416.772 |