Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01444 ATGAGCTTTCAGGACATCGAGGCTGGACGGCCTTTCGCTTCCCGGCGCAACGGCAAACAGGACCCTACGCAAGCGGTGGCTTCCGGCATATTTCAGATCAACACCGCCGTCTCCACGTTCCAGCGACTCGTCAACACGCTCGGAACCCCCAAGGACACGCCCGAACTCCGCGAGAAGTTGCATAAGACAAGACTGCACATTGGACAACTGGTGAAGGATACGTCGAATAAACTTAAGCAAGCTAGTGAGATCGATCACAATGCTGAAGTTAATGCGAATAAGAAGATAGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCGGTGTTGAAAGAGTTTCAGAAGGCTCAGCGTCTTTCAGCTGAGAGGGAAACAGCTTACACACCTTTTGTTCCACAAGCAGTTCTTCCATCCAGCTATACAGCTGGCGAAGTAGCCATTAGTTCTGATAAGACTCCAGAACAGCGGGCCCTTCTTGTGGAATCTAGGAGACAGGAAGTGTTATTCTTAGATAATGAGATTGCATTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCATCAGCAAATTGGTGAAGTGAATGAGATTTTCAAAGATCTTGCCGTTCTTGTCCATGAGCAAGGAGCAATAATTGATGATATTGGCACCAATATTGAGAATTCTCATGAAGCAACTGCACGAGCAAAATCTCAACTTGCCAAAGCATCAAAGACGCAAAGATCAAATTCATCTTTGACGTGCTTGCTTTTGGTGATATTTGGGATCGTGCTTCTAATCGTCATCATTGTCCTTGCTGCTTAG 813 0.4588 MSFQDIEAGRPFASRRNGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSNKLKQASEIDHNAEVNANKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQAVLPSSYTAGEVAISSDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIHQQIGEVNEIFKDLAVLVHEQGAIIDDIGTNIENSHEATARAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01444 270 SMART SynN_4 10 124 IPR006011 GO:0016020
Viun2g01444 270 SUPERFAMILY t-snare proteins 20 232 IPR010989 GO:0016020|GO:0016192
Viun2g01444 270 CDD SNARE_Qa 180 238 - -
Viun2g01444 270 ProSitePatterns Syntaxin / epimorphin family signature. 183 222 IPR006012 GO:0005484|GO:0006886|GO:0016020
Viun2g01444 270 Pfam Syntaxin-like protein 27 126 IPR006011 GO:0016020
Viun2g01444 270 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 177 239 IPR000727 -
Viun2g01444 270 FunFam Syntaxin-22 like 17 130 - -
Viun2g01444 270 Pfam SNARE domain 214 265 IPR000727 -
Viun2g01444 270 FunFam Syntaxin-22 like 170 270 - -
Viun2g01444 270 Gene3D - 171 270 - -
Viun2g01444 270 PANTHER SYNTAXIN 23 262 IPR045242 -
Viun2g01444 270 CDD SynN 20 144 IPR006011 GO:0016020
Viun2g01444 270 SMART tSNARE_6 172 239 IPR000727 -
Viun2g01444 270 MobiDBLite consensus disorder prediction 1 23 - -
Viun2g01444 270 Gene3D - 13 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01444 Viun-Chr2 24870529 24873922 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01444 1 258 SNARE and Associated Proteins AT5G46860 78.846 1.25e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01444 - - gmx:100810149 416.772