Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01443 ATGAGCTTTCAGGACATCGAGGCTGGACGGCCTTTCGCTTCCCGGCGCAACGGCAAACAGGACCCTACGCAAGCGGTGGCTTCCGGCATATTTCAGATCAACACCGCCGTCTCCACGTTCCAGCGACTCGTCAACACGCTCGGAACCCCCAAGGACACGCCCGAACTCCGCGAGAAGTTGCATAAGACAAGACTGCACATTGGACAACTGGTGAAGGATACGTCGAATAAACTTAAGCAAGCTAGTGAGATCGATCACAATGCTGAAGTTAATAAGAAGTGGCGTTCAATGTCCTGTTTATATTTGCAGGCGAATAAGAAGATAGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCGGTGTTGAAAGAGTTTCAGAAGGCTCAGCGTCTTTCAGCTGAGAGGGAAACAGCTTACACACCTTTTGTTCCACAAGCAGTTCTTCCATCCAGCTATACAGCTGGCGAAGTAGCCATTAGTTCTGATAAGACTCCAGAACAGCGGGCCCTTCTTGTGGAATCTAGGAGACAGGAAGTGTTATTCTTAGATAATGAGATTGCATTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCATCAGCAAATTGGTGAAGTGAATGAGATTTTCAAAGATCTTGCCGTTCTTGTCCATGAGCAAGGAGCAATAATTGATGATATTGGCACCAATATTGAGAATTCTCATGAAGCAACTGCACGAGCAAAATCTCAACTTGCCAAAGCATCAAAGACGCAAAGATCAAATTCATCTTTGACGTGCTTGCTTTTGGTGATATTTGGGATCGTGCTTCTAATCGTCATCATTGTCCTTGCTGCTTAG 849 0.4558 MSFQDIEAGRPFASRRNGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSNKLKQASEIDHNAEVNKKWRSMSCLYLQANKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQAVLPSSYTAGEVAISSDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIHQQIGEVNEIFKDLAVLVHEQGAIIDDIGTNIENSHEATARAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01443 282 Gene3D - 13 142 - -
Viun2g01443 282 SMART SynN_4 10 136 IPR006011 GO:0016020
Viun2g01443 282 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 189 251 IPR000727 -
Viun2g01443 282 Pfam SNARE domain 226 277 IPR000727 -
Viun2g01443 282 CDD SNARE_Qa 192 250 - -
Viun2g01443 282 ProSitePatterns Syntaxin / epimorphin family signature. 195 234 IPR006012 GO:0005484|GO:0006886|GO:0016020
Viun2g01443 282 Pfam Syntaxin-like protein 27 138 IPR006011 GO:0016020
Viun2g01443 282 SUPERFAMILY t-snare proteins 20 244 IPR010989 GO:0016020|GO:0016192
Viun2g01443 282 Gene3D - 183 282 - -
Viun2g01443 282 FunFam Syntaxin-22 like 17 142 - -
Viun2g01443 282 FunFam Syntaxin-22 like 182 282 - -
Viun2g01443 282 SMART tSNARE_6 184 251 IPR000727 -
Viun2g01443 282 PANTHER SYNTAXIN 23 274 IPR045242 -
Viun2g01443 282 MobiDBLite consensus disorder prediction 1 23 - -
Viun2g01443 282 CDD SynN 20 156 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01443 Viun-Chr2 24870529 24873925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01443 1 270 SNARE and Associated Proteins AT5G46860 75.368 3.35e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01443 - - gmx:547656 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01443 2 24870529 24873925 Viun2g01443 2 24870529 24873925 ECH
Viun2g01443 2 24870529 24873925 Viun3g03078 3 37105915 37110009 PCT