LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun2g01441	ATGACATTGGTTATCAGAGAGAGGAGACACAAACAAGCTCTGAGCCTTTCATTACCAAAATCTCTTTCAATTCCATCATCAAATTCAGATTCTCCTCACCAAATTCACGTACCAGTACTCACATCCCCATCTTCTTCTTCTTCTTCTTCCCATGTACACTCTTCTCCAAGCATTATCAAGGACCTTTCGGATCTTGAGAAGCGAGAAGTTCTTGGCCATGGCAATGGTGGCACAGTCTACAAAGTTTATCACACCAAAACTCGCTCTTTCTATGCCTTGAAAGTGCTACGTTTGAATGGCATTCGCCAACCCGTGGAGGCTGAGATTCTAAAACGAGTGGATTCACCGTATATAGTAAAGTGTCATGCAGTTTTTGATAGTGGTAACAGTAATAATGATGGAGACAAAAGAGGTGACATTAGCTTTGTTATGGAATACATGGAAGGAGGGTCGTTGAATGATGTGTTGAGACAACATCGTATACTGTCGGAGAAGGTTATATCAGTGTTGGCAAGGCGTGTTTTGGAAGGACTTGGTTATTTACATGGCATGAACATTGTGCATAGAGATATTAAACCATCAAATTTACTTATTAATGGTAAAGGGGAGGTAAAGATTGCAGATTTTGGAGTGAGTCATGTGGTGGAGGGTAGGTTTGAAGGAAATGAGAATGATGCAGGAACTTGTGCTTACATGAGTCCAGAAAGGATTGATCCAGAAAGATGGGGTGGTGAAAATGCAGATGAGTTTGCAGGAGATGTGTGGTCAATGGGAGTAGTAATGTTGGAATGTCTTTTGGGTTATTTTCCATTGATTGGTGCAGGGCAAAGACCAGATTGGGCAACTTTGATGTGTGCAATTTGCTTTGGTGAGAAGTTGGAGATGCCAGAAAAAGCATCACCAGAGTTTCAAAATTTTGTGAGGAGGTGTCTTGAGAAGAATTGGAGGAAGAGAGCAACAGTGTTAGAACTTCTGCATCACCCTTTTGTGAGTTAA	996	0.4137	MTLVIRERRHKQALSLSLPKSLSIPSSNSDSPHQIHVPVLTSPSSSSSSSHVHSSPSIIKDLSDLEKREVLGHGNGGTVYKVYHTKTRSFYALKVLRLNGIRQPVEAEILKRVDSPYIVKCHAVFDSGNSNNDGDKRGDISFVMEYMEGGSLNDVLRQHRILSEKVISVLARRVLEGLGYLHGMNIVHRDIKPSNLLINGKGEVKIADFGVSHVVEGRFEGNENDAGTCAYMSPERIDPERWGGENADEFAGDVWSMGVVMLECLLGYFPLIGAGQRPDWATLMCAICFGEKLEMPEKASPEFQNFVRRCLEKNWRKRATVLELLHHPFVS	331

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun2g01441	331	MobiDBLite	consensus disorder prediction	21	57	-	-
	Viun2g01441	331	SUPERFAMILY	Protein kinase-like (PK-like)	38	330	IPR011009	-
	Viun2g01441	331	CDD	PKc_MAPKK_plant_like	63	330	-	-
	Viun2g01441	331	FunFam	Mitogen-activated protein kinase 2	149	331	-	-
	Viun2g01441	331	MobiDBLite	consensus disorder prediction	21	58	-	-
	Viun2g01441	331	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	186	198	IPR008271	GO:0004672\|GO:0006468
	Viun2g01441	331	ProSiteProfiles	Protein kinase domain profile.	65	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g01441	331	Pfam	Protein kinase domain	66	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g01441	331	SMART	serkin_6	65	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun2g01441	331	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	19	330	-	-
	Viun2g01441	331	Gene3D	Transferase(Phosphotransferase) domain 1	59	331	-	-
	Viun2g01441	331	PRINTS	Tyrosine kinase catalytic domain signature	144	157	IPR001245	GO:0004672\|GO:0006468
	Viun2g01441	331	PRINTS	Tyrosine kinase catalytic domain signature	252	274	IPR001245	GO:0004672\|GO:0006468
	Viun2g01441	331	PRINTS	Tyrosine kinase catalytic domain signature	180	198	IPR001245	GO:0004672\|GO:0006468
	Viun2g01441	331	ProSitePatterns	Protein kinases ATP-binding region signature.	71	94	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun2g01441	Viun-Chr2	24860331	24861327	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun2g01441	1	330	MAP Kinase Kinase Gene Family	AT1G32320	53.453	5.61e-111	323

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Viun2g01441		Pkinase	5.4e-60	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun2g01441	K20604		-	vra:106777505	557.755