Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01440 ATGGATAACGGTGGCTCTGCTCCGGCGGCGTCGATTCCGAACGCCAACGCGCCGCCGCCTTTTCTGAGCAAGACTTACGACATGGTGGAAGACCCTTCCACCGACGCGATCGTGTCATGGAGTGCAACCAACAACAGCTTCATCGTGTGGGACCCACCCGAATTTGCCAGGGACCTTTTGCCCAAATACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTATGGTTTCAGAAAGGTCGATCCAGATCGTTGGGAATTTGCAAATGAGGGTTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAATATAACACGAAGAAAACCTGCCCATGGTCAAAACCATCAACAGGCTCAGCAACCCAATGGACAGAGTTCATCAGTAGGGGCATGTGTTGAAGTCGGAAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAGACCACTGATAACCAGTTGCAAACAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAGCAAATGATGTCATTCCTTGCGAAAGCTGTCCAGAGCCCTGGATTCTTTGCTCAGTTTGTACAACAACAAAATGAGAGCAATAGGCGCATAACTGAAGTCAACAAAAAGCGTAGGCTCAAGCAGGAAGGTATCGCAGAAACAGTGAGTGCTGCTACTCCAGATGGACAAATTGTTAAATATCAACCTCTGGTGAATGAAGCTGCAAAAGCCATGCTTAAGCAGATCATGAAATGGGATACTTCTCGTGTAGAATCTTTCAATAAAAACCCCGAGGAGTACATCATTGGTGATGCTTCATCATCTTCCAGTGGAATGGACAGTAGTGGCTCTTCAGGCTGGACTTCCGGAGTCACTCTTAAGGAGGTATCTCCAGCTTCGGTGCAGTCTTCACACGTTCCAGCTGCTACTGGGACCCAAGGGCATGTCCTCCCAACTGTTAAACCTGAAATTCCGTCTGTAGCACAAGCATTAGCTTCTGAAAATGTTACAGAGGATGGAGGACATGGTGCGCCTTCAATCCCCGTTTCTCAAGCAAATGTGGTGATCCCTGATCTTCCTCCAATAACAGAGATGGTGACAGGAAATATGCTTGATATTCCCGAAGAAAATTATATGGCAACTGAATCGGATGAGGGATTTATGGATCCTTCATTGGGCGCTGCTGGGTCATTTCCCATTGATTTTGAGGTCATTTCACCTGATAACATTGATGATTTCTTAGGAAATCCTTCTATTTGGGATGAAATTTTGCAAACTCCAGTTCCAGAGGATATCGACACCAATATTGCCGATGTACCCAACGGGAATGAGGTCCAGCCAACGGAAAATGGATGGAGCAAAACTCAACGTATGGATCACCTTACAGAGCAGATGGGTCTTCTTTCTTCTGATACAAAACGAGTTTGA 1473 0.463 MDNGGSAPAASIPNANAPPPFLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRNITRRKPAHGQNHQQAQQPNGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNRRITEVNKKRRLKQEGIAETVSAATPDGQIVKYQPLVNEAAKAMLKQIMKWDTSRVESFNKNPEEYIIGDASSSSSGMDSSGSSGWTSGVTLKEVSPASVQSSHVPAATGTQGHVLPTVKPEIPSVAQALASENVTEDGGHGAPSIPVSQANVVIPDLPPITEMVTGNMLDIPEENYMATESDEGFMDPSLGAAGSFPIDFEVISPDNIDDFLGNPSIWDEILQTPVPEDIDTNIADVPNGNEVQPTENGWSKTQRMDHLTEQMGLLSSDTKRV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01440 490 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 292 IPR027725 -
Viun2g01440 490 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g01440 490 Gene3D - 14 111 IPR036388 -
Viun2g01440 490 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g01440 490 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g01440 490 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g01440 490 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g01440 490 SUPERFAMILY "Winged helix" DNA-binding domain 16 110 IPR036390 -
Viun2g01440 490 FunFam Heat shock transcription factor 1 14 111 - -
Viun2g01440 490 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g01440 490 Coils Coil 139 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01440 Viun-Chr2 24853258 24857078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01440 10 487 HSF AT1G32330 55.689 2.21e-172 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun2g01440 HSF_DNA-bind 1.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01440 K09419 - gmx:100815121 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01440 2 24853258 24857078 Viun2g01440 2 24853258 24857078 ECH