Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01435 ATGAGAGGGAAACAGCAACGTGGAGCGGAAGACTCGTTCTTCGCTCCAAACGCTTCTGCCGCGCACCACAATTTGGGCTCACCAAACCACCGCAGGCCCGCACGTAGGAACCGAGGCCCACACCAACCGAACTTGAAATACCGTGTCGTGAACAAGCCTGCTGCGGTTTCTTCCTTCAACTCTCATTCCGTTGAGGATGTCAACGAGGACGTAACTGTCGCATCTCTAAATCACCATGGCGAGGACGCGGGCGGTGCCTCCGAGCTCAACACCGTTGACGGCACCGATCGCGTGGTTTGTTCCAGCAAGGTCGAGGAAGGAGGCGGCGATAATGATGATGATGACGACGGTGATGATGATGACGATATTCAGACCAGGCTTGATAAGCTGCTCTGTAAAATTGAGGAACCTGATTTGTCCGAGGAGCAGATCAGAATCAATGATCAATTGCAACAAGATGAGATACTTGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCGGCCTTGAGAGATGGAAAGGCTTGCGTTGTTTTCAGATACATATACACATTGATGTTTTGGGTGAAATAGCCATCACTGCTAAGTTGAACTCTTTTAATCAACTTGAGACTGTAAACAGCAGTTCAGATGAATTCTTATACACTTTCAAAGTCCAATATCTTCCACCGGTTGTTTTGACATGTTTATTACCTAAGTCTTACCCTAGCCACCAACCACCTATTTTTACACTCTCTGTTAAGTGGTTGGAACCTGCGAAGATTCTGAGACTGTGTTCCAAGTTGGATTCAATATGGGCTGAACAACAAGGGCAGGAAGTAATTTACCCTTGGGTAGAATGGTTGCATGGTTCTTCTCTTTCTCATCTGGGATTTGATGAAGAAATCACACTTGGGCCTTATGGCATGAATGTTGTCCAGGATGAGCGCGTTGTTTCTGGAGCTGAATGCATTGATATTGATATTCCTTTTTTACGAAATTACAATGATAAGAGACACAATGAGAACTTCCTCAAAGAATTACATCAATGTAACATTTGCTTTGGTGAATATGCAGGTTCCGAGTTTATCCGGTTGCCATGTATGCATTTCTTTTGCCTCAAATGCTTGAAGACCTTTGCCCAGATACATGTAAAGGAAGGAACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGTACAGTCATGATTCCACCTGGCCTTTTAAAACACTTGCTAGATGACAGAGATTATGAGCGCTGGGAATCAATGATGTTGGAAAAAACACTTGCATCAATGTCTGATGTTGTTTATTGTCCAAGATGTGAAACCCCCTGTATAGAGGATGAAGACCAGCATGCTCAATGCCCAAAATGTTATTTTAGTTTTTGTACCCTTTGCAGGGAACGACGCCACGTTGGCATAGCATGCATGAGTCTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTCATCCCATTTAAAGGAAGATCAAAAGCGTAGAGAACGTGAAAAGATTAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTATGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAGATGAAATGTGGTAATTGTGAACAATACTTTTGTTACCGCTGCAACAAGGCAATTGATCCATTAGATCCTTATGGACATTTCAGGGATGGTTCATGTGAGCTGTTCCCACGAGAAATGGTTGAGTCCTGGCAAGAGCGAATAAATGATCGCCAGGTAGTAGGACAGTTACACGCTGAGCTTTTTCCTCAACGAGGCTTGACATGTCCTAATTGTCGTCAATTTAATGCAAAGATTGGAAATAATAATCACTTGTTTTGCTGGGCATGCCAAAGCCACTACTGCTACTTGTGCAAAGAGATTGTGAGGCGCGGCACCAAGCATTATGGACCCAAGGGCTGCAAACAGCATTCCGAGGGATAG 1953 0.4357 MRGKQQRGAEDSFFAPNASAAHHNLGSPNHRRPARRNRGPHQPNLKYRVVNKPAAVSSFNSHSVEDVNEDVTVASLNHHGEDAGGASELNTVDGTDRVVCSSKVEEGGGDNDDDDDGDDDDDIQTRLDKLLCKIEEPDLSEEQIRINDQLQQDEILVVESIYGENVFGLERWKGLRCFQIHIHIDVLGEIAITAKLNSFNQLETVNSSSDEFLYTFKVQYLPPVVLTCLLPKSYPSHQPPIFTLSVKWLEPAKILRLCSKLDSIWAEQQGQEVIYPWVEWLHGSSLSHLGFDEEITLGPYGMNVVQDERVVSGAECIDIDIPFLRNYNDKRHNENFLKELHQCNICFGEYAGSEFIRLPCMHFFCLKCLKTFAQIHVKEGTVSNLQCPEAKCTVMIPPGLLKHLLDDRDYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQDRQNSSHLKEDQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDPLDPYGHFRDGSCELFPREMVESWQERINDRQVVGQLHAELFPQRGLTCPNCRQFNAKIGNNNHLFCWACQSHYCYLCKEIVRRGTKHYGPKGCKQHSEG 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01435 650 CDD RING-HC_ITT1-like 337 396 - -
Viun2g01435 650 SUPERFAMILY UBC-like 147 282 IPR016135 -
Viun2g01435 650 Gene3D Ubiquitin Conjugating Enzyme 140 289 IPR016135 -
Viun2g01435 650 FunFam RBR-type E3 ubiquitin transferase 338 422 - -
Viun2g01435 650 ProSiteProfiles RWD domain profile. 153 288 IPR006575 GO:0005515
Viun2g01435 650 ProSiteProfiles TRIAD supradomain profile. 339 569 IPR044066 -
Viun2g01435 650 CDD Rcat_RBR_RNF14 501 566 IPR047548 GO:0008270
Viun2g01435 650 ProSitePatterns Zinc finger RING-type signature. 360 369 IPR017907 -
Viun2g01435 650 SUPERFAMILY RING/U-box 411 473 - -
Viun2g01435 650 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 201 558 IPR031127 GO:0004842|GO:0016567
Viun2g01435 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 426 IPR013083 -
Viun2g01435 650 Pfam RWD domain 149 282 IPR006575 GO:0005515
Viun2g01435 650 Gene3D - 484 592 - -
Viun2g01435 650 SMART ibrneu5 411 469 IPR002867 GO:0008270
Viun2g01435 650 SMART ibrneu5 498 563 IPR002867 GO:0008270
Viun2g01435 650 SMART ring_2 599 628 IPR001841 -
Viun2g01435 650 SMART ring_2 431 519 IPR001841 -
Viun2g01435 650 SMART ring_2 343 390 IPR001841 -
Viun2g01435 650 FunFam RBR-type E3 ubiquitin transferase 484 593 - -
Viun2g01435 650 SUPERFAMILY RING/U-box 596 647 - -
Viun2g01435 650 ProSiteProfiles Zinc finger RING-type profile. 343 391 IPR001841 -
Viun2g01435 650 Pfam IBR domain, a half RING-finger domain 411 469 IPR002867 GO:0008270
Viun2g01435 650 Pfam IBR domain, a half RING-finger domain 506 549 IPR002867 GO:0008270
Viun2g01435 650 SUPERFAMILY RING/U-box 338 422 - -
Viun2g01435 650 MobiDBLite consensus disorder prediction 1 50 - -
Viun2g01435 650 SMART RWD2001b 153 288 IPR006575 GO:0005515
Viun2g01435 650 SUPERFAMILY RING/U-box 502 559 - -
Viun2g01435 650 MobiDBLite consensus disorder prediction 102 122 - -
Viun2g01435 650 CDD BRcat_RBR_RNF14 422 473 - -
Viun2g01435 650 MobiDBLite consensus disorder prediction 28 42 - -
Viun2g01435 650 MobiDBLite consensus disorder prediction 108 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01435 Viun-Chr2 24830962 24837075 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01435 342 604 ARIADNE family AT2G31780 21.854 1.38e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01435 K11971 - gmx:100500662 1081.24