Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun2g01434 | ATGAGAGGGAAACAGCAACGTGGAGCGGAAGACTCGTTCTTCGCTCCAAACGCTTCTGCCGCGCACCACAATTTGGGCTCACCAAACCACCGCAGGCCCGCACGTAGGAACCGAGGCCCACACCAACCGAACTTGAAATACCGTGTCGTGAACAAGCCTGCTGCGGTTTCTTCCTTCAACTCTCATTCCGTTGAGGATGTCAACGAGGACGTAACTGTCGCATCTCTAAATCACCATGGCGAGGACGCGGGCGGTGCCTCCGAGCTCAACACCGTTGACGGCACCGATCGCGTGGTTTGTTCCAGCAAGGTCGAGGAAGGAGGCGGCGATAATGATGATGATGACGACGGTGATGATGATGACGATATTCAGACCAGGCTTGATAAGCTGCTCTGTAAAATTGAGGAACCTGATTTGTCCGAGGAGCAGATCAGAATCAATGATCAATTGCAACAAGATGAGATACTTGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCGGCCTTGAGAGATGGAAAGGCTTGCGTTGTTTTCAGATACATATACACATTGATGTTTTGGGTGAAATAGCCATCACTGCTAAGTTGAACTCTTTTAATCAACTTGAGACTGTAAACAGCAGTTCAGATGAATTCTTATACACTTTCAAAGTCCAATATCTTCCACCGGTTGTTTTGACATGTTTATTACCTAAGTCTTACCCTAGCCACCAACCACCTATTTTTACACTCTCTGTTAAGTGGTTGGAACCTGCGAAGATTCTGAGACTGTGTTCCAAGTTGGATTCAATATGGGCTGAACAACAAGGGCAGGAAGTAATTTACCCTTGGGTAGAATGGTTGCATGGTTCTTCTCTTTCTCATCTGGGATTTGATGAAGAAATCACACTTGGGCCTTATGGCATGAATGTTGTCCAGGATGAGCGCGTTGTTTCTGGAGCTGAATGCATTGATATTGATATTCCTTTTTTACGAAATTACAATGATAAGAGACACAATGAGAACTTCCTCAAAGAATTACATCAATGTAACATTTGCTTTGGTGAATATGCAGGTTCCGAGTTTATCCGGTTGCCATGTATGCATTTCTTTTGCCTCAAATGCTTGAAGACCTTTGCCCAGATACATGTAAAGGAAGGAACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGTACAGTCATGATTCCACCTGGCCTTTTAAAACACTTGCTAGATGACAGAGATTATGAGCGCTGGGAATCAATGATGTTGGAAAAAACACTTGCATCAATGTCTGATGTTGTTTATTGTCCAAGATGTGAAACCCCCTGTATAGAGGATGAAGACCAGCATGCTCAATGCCCAAAATGTTATTTTAGTTTTTGTACCCTTTGCAGGGAACGACGCCACGTTGGCATAGCATGCATGAGTCTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTCATCCCATTTAAAGGAAGATCAAAAGCGTAGAGAACGTGAAAAGATTAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTATGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAGATGAAATGTGGTAATTGTGAACAATACTTTTGTTACCGCTGCAACAAGGCAATTGATCCATTAGATCCTTATGGACATTTCAGGGATGGTTCATGTGAGCTGTTCCCACGAGAAATGGTTGAGTCCTGGCAAGAGCGAATAAATGATCGCCAGGTAGTAGGACAGTTACACGCTGAGCTTTTTCCTCAACGAGGCTTGACATGTCCTAATTGTCGTCAATTTAATGCAAAGCAATACCTTTTGTGA | 1839 | 0.4318 | MRGKQQRGAEDSFFAPNASAAHHNLGSPNHRRPARRNRGPHQPNLKYRVVNKPAAVSSFNSHSVEDVNEDVTVASLNHHGEDAGGASELNTVDGTDRVVCSSKVEEGGGDNDDDDDGDDDDDIQTRLDKLLCKIEEPDLSEEQIRINDQLQQDEILVVESIYGENVFGLERWKGLRCFQIHIHIDVLGEIAITAKLNSFNQLETVNSSSDEFLYTFKVQYLPPVVLTCLLPKSYPSHQPPIFTLSVKWLEPAKILRLCSKLDSIWAEQQGQEVIYPWVEWLHGSSLSHLGFDEEITLGPYGMNVVQDERVVSGAECIDIDIPFLRNYNDKRHNENFLKELHQCNICFGEYAGSEFIRLPCMHFFCLKCLKTFAQIHVKEGTVSNLQCPEAKCTVMIPPGLLKHLLDDRDYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQDRQNSSHLKEDQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDPLDPYGHFRDGSCELFPREMVESWQERINDRQVVGQLHAELFPQRGLTCPNCRQFNAKQYLL | 612 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun2g01434 | 612 | CDD | RING-HC_ITT1-like | 337 | 396 | - | - | |
Viun2g01434 | 612 | SUPERFAMILY | RING/U-box | 502 | 559 | - | - | |
Viun2g01434 | 612 | Pfam | Zinc finger, C3HC4 type (RING finger) | 343 | 388 | IPR018957 | GO:0046872 | |
Viun2g01434 | 612 | Gene3D | - | 485 | 591 | - | - | |
Viun2g01434 | 612 | ProSiteProfiles | RWD domain profile. | 153 | 288 | IPR006575 | GO:0005515 | |
Viun2g01434 | 612 | FunFam | RBR-type E3 ubiquitin transferase | 484 | 593 | - | - | |
Viun2g01434 | 612 | ProSiteProfiles | TRIAD supradomain profile. | 339 | 569 | IPR044066 | - | |
Viun2g01434 | 612 | CDD | Rcat_RBR_RNF14 | 501 | 566 | IPR047548 | GO:0008270 | |
Viun2g01434 | 612 | ProSitePatterns | Zinc finger RING-type signature. | 360 | 369 | IPR017907 | - | |
Viun2g01434 | 612 | SUPERFAMILY | RING/U-box | 411 | 473 | - | - | |
Viun2g01434 | 612 | SMART | ibrneu5 | 411 | 469 | IPR002867 | GO:0008270 | |
Viun2g01434 | 612 | SMART | ibrneu5 | 498 | 563 | IPR002867 | GO:0008270 | |
Viun2g01434 | 612 | SUPERFAMILY | RING/U-box | 338 | 422 | - | - | |
Viun2g01434 | 612 | FunFam | RBR-type E3 ubiquitin transferase | 338 | 422 | - | - | |
Viun2g01434 | 612 | SUPERFAMILY | UBC-like | 147 | 282 | IPR016135 | - | |
Viun2g01434 | 612 | ProSiteProfiles | Zinc finger RING-type profile. | 343 | 391 | IPR001841 | - | |
Viun2g01434 | 612 | Pfam | IBR domain, a half RING-finger domain | 506 | 549 | IPR002867 | GO:0008270 | |
Viun2g01434 | 612 | Pfam | IBR domain, a half RING-finger domain | 411 | 469 | IPR002867 | GO:0008270 | |
Viun2g01434 | 612 | SMART | ring_2 | 431 | 519 | IPR001841 | - | |
Viun2g01434 | 612 | SMART | ring_2 | 343 | 390 | IPR001841 | - | |
Viun2g01434 | 612 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 338 | 426 | IPR013083 | - | |
Viun2g01434 | 612 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 201 | 569 | IPR031127 | GO:0004842|GO:0016567 | |
Viun2g01434 | 612 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Viun2g01434 | 612 | SMART | RWD2001b | 153 | 288 | IPR006575 | GO:0005515 | |
Viun2g01434 | 612 | Gene3D | Ubiquitin Conjugating Enzyme | 140 | 289 | IPR016135 | - | |
Viun2g01434 | 612 | MobiDBLite | consensus disorder prediction | 102 | 122 | - | - | |
Viun2g01434 | 612 | Pfam | RWD domain | 149 | 282 | IPR006575 | GO:0005515 | |
Viun2g01434 | 612 | CDD | BRcat_RBR_RNF14 | 422 | 473 | - | - | |
Viun2g01434 | 612 | MobiDBLite | consensus disorder prediction | 28 | 42 | - | - | |
Viun2g01434 | 612 | MobiDBLite | consensus disorder prediction | 108 | 122 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun2g01434 | Viun-Chr2 | 24830961 | 24836712 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun2g01434 | 342 | 573 | C3H Transcription Factor Family | AT2G31770 | 25.417 | 7.90e-16 | 79.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun2g01434 | K11971 | - | gmx:100500662 | 986.482 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun2g01434 | 2 | 24830961 | 24836712 | Viun2g01434 | 2 | 24830961 | 24836712 | ECH |