Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01434 ATGAGAGGGAAACAGCAACGTGGAGCGGAAGACTCGTTCTTCGCTCCAAACGCTTCTGCCGCGCACCACAATTTGGGCTCACCAAACCACCGCAGGCCCGCACGTAGGAACCGAGGCCCACACCAACCGAACTTGAAATACCGTGTCGTGAACAAGCCTGCTGCGGTTTCTTCCTTCAACTCTCATTCCGTTGAGGATGTCAACGAGGACGTAACTGTCGCATCTCTAAATCACCATGGCGAGGACGCGGGCGGTGCCTCCGAGCTCAACACCGTTGACGGCACCGATCGCGTGGTTTGTTCCAGCAAGGTCGAGGAAGGAGGCGGCGATAATGATGATGATGACGACGGTGATGATGATGACGATATTCAGACCAGGCTTGATAAGCTGCTCTGTAAAATTGAGGAACCTGATTTGTCCGAGGAGCAGATCAGAATCAATGATCAATTGCAACAAGATGAGATACTTGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCGGCCTTGAGAGATGGAAAGGCTTGCGTTGTTTTCAGATACATATACACATTGATGTTTTGGGTGAAATAGCCATCACTGCTAAGTTGAACTCTTTTAATCAACTTGAGACTGTAAACAGCAGTTCAGATGAATTCTTATACACTTTCAAAGTCCAATATCTTCCACCGGTTGTTTTGACATGTTTATTACCTAAGTCTTACCCTAGCCACCAACCACCTATTTTTACACTCTCTGTTAAGTGGTTGGAACCTGCGAAGATTCTGAGACTGTGTTCCAAGTTGGATTCAATATGGGCTGAACAACAAGGGCAGGAAGTAATTTACCCTTGGGTAGAATGGTTGCATGGTTCTTCTCTTTCTCATCTGGGATTTGATGAAGAAATCACACTTGGGCCTTATGGCATGAATGTTGTCCAGGATGAGCGCGTTGTTTCTGGAGCTGAATGCATTGATATTGATATTCCTTTTTTACGAAATTACAATGATAAGAGACACAATGAGAACTTCCTCAAAGAATTACATCAATGTAACATTTGCTTTGGTGAATATGCAGGTTCCGAGTTTATCCGGTTGCCATGTATGCATTTCTTTTGCCTCAAATGCTTGAAGACCTTTGCCCAGATACATGTAAAGGAAGGAACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGTACAGTCATGATTCCACCTGGCCTTTTAAAACACTTGCTAGATGACAGAGATTATGAGCGCTGGGAATCAATGATGTTGGAAAAAACACTTGCATCAATGTCTGATGTTGTTTATTGTCCAAGATGTGAAACCCCCTGTATAGAGGATGAAGACCAGCATGCTCAATGCCCAAAATGTTATTTTAGTTTTTGTACCCTTTGCAGGGAACGACGCCACGTTGGCATAGCATGCATGAGTCTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTCATCCCATTTAAAGGAAGATCAAAAGCGTAGAGAACGTGAAAAGATTAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTATGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAGATGAAATGTGGTAATTGTGAACAATACTTTTGTTACCGCTGCAACAAGGCAATTGATCCATTAGATCCTTATGGACATTTCAGGGATGGTTCATGTGAGCTGTTCCCACGAGAAATGGTTGAGTCCTGGCAAGAGCGAATAAATGATCGCCAGGTAGTAGGACAGTTACACGCTGAGCTTTTTCCTCAACGAGGCTTGACATGTCCTAATTGTCGTCAATTTAATGCAAAGCAATACCTTTTGTGA 1839 0.4318 MRGKQQRGAEDSFFAPNASAAHHNLGSPNHRRPARRNRGPHQPNLKYRVVNKPAAVSSFNSHSVEDVNEDVTVASLNHHGEDAGGASELNTVDGTDRVVCSSKVEEGGGDNDDDDDGDDDDDIQTRLDKLLCKIEEPDLSEEQIRINDQLQQDEILVVESIYGENVFGLERWKGLRCFQIHIHIDVLGEIAITAKLNSFNQLETVNSSSDEFLYTFKVQYLPPVVLTCLLPKSYPSHQPPIFTLSVKWLEPAKILRLCSKLDSIWAEQQGQEVIYPWVEWLHGSSLSHLGFDEEITLGPYGMNVVQDERVVSGAECIDIDIPFLRNYNDKRHNENFLKELHQCNICFGEYAGSEFIRLPCMHFFCLKCLKTFAQIHVKEGTVSNLQCPEAKCTVMIPPGLLKHLLDDRDYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQDRQNSSHLKEDQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDPLDPYGHFRDGSCELFPREMVESWQERINDRQVVGQLHAELFPQRGLTCPNCRQFNAKQYLL 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01434 612 CDD RING-HC_ITT1-like 337 396 - -
Viun2g01434 612 SUPERFAMILY RING/U-box 502 559 - -
Viun2g01434 612 Pfam Zinc finger, C3HC4 type (RING finger) 343 388 IPR018957 GO:0046872
Viun2g01434 612 Gene3D - 485 591 - -
Viun2g01434 612 ProSiteProfiles RWD domain profile. 153 288 IPR006575 GO:0005515
Viun2g01434 612 FunFam RBR-type E3 ubiquitin transferase 484 593 - -
Viun2g01434 612 ProSiteProfiles TRIAD supradomain profile. 339 569 IPR044066 -
Viun2g01434 612 CDD Rcat_RBR_RNF14 501 566 IPR047548 GO:0008270
Viun2g01434 612 ProSitePatterns Zinc finger RING-type signature. 360 369 IPR017907 -
Viun2g01434 612 SUPERFAMILY RING/U-box 411 473 - -
Viun2g01434 612 SMART ibrneu5 411 469 IPR002867 GO:0008270
Viun2g01434 612 SMART ibrneu5 498 563 IPR002867 GO:0008270
Viun2g01434 612 SUPERFAMILY RING/U-box 338 422 - -
Viun2g01434 612 FunFam RBR-type E3 ubiquitin transferase 338 422 - -
Viun2g01434 612 SUPERFAMILY UBC-like 147 282 IPR016135 -
Viun2g01434 612 ProSiteProfiles Zinc finger RING-type profile. 343 391 IPR001841 -
Viun2g01434 612 Pfam IBR domain, a half RING-finger domain 506 549 IPR002867 GO:0008270
Viun2g01434 612 Pfam IBR domain, a half RING-finger domain 411 469 IPR002867 GO:0008270
Viun2g01434 612 SMART ring_2 431 519 IPR001841 -
Viun2g01434 612 SMART ring_2 343 390 IPR001841 -
Viun2g01434 612 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 426 IPR013083 -
Viun2g01434 612 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 201 569 IPR031127 GO:0004842|GO:0016567
Viun2g01434 612 MobiDBLite consensus disorder prediction 1 50 - -
Viun2g01434 612 SMART RWD2001b 153 288 IPR006575 GO:0005515
Viun2g01434 612 Gene3D Ubiquitin Conjugating Enzyme 140 289 IPR016135 -
Viun2g01434 612 MobiDBLite consensus disorder prediction 102 122 - -
Viun2g01434 612 Pfam RWD domain 149 282 IPR006575 GO:0005515
Viun2g01434 612 CDD BRcat_RBR_RNF14 422 473 - -
Viun2g01434 612 MobiDBLite consensus disorder prediction 28 42 - -
Viun2g01434 612 MobiDBLite consensus disorder prediction 108 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01434 Viun-Chr2 24830961 24836712 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01434 342 573 C3H Transcription Factor Family AT2G31770 25.417 7.90e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01434 K11971 - gmx:100500662 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01434 2 24830961 24836712 Viun2g01434 2 24830961 24836712 ECH