Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01426 ATGGGCAAGAAGAAACCCAAGGACCCGCAACAAACTCTTCAAACCGACACCGATCCACCCCCTTCCAGCATTTTCAACAAGCTCTTTGGCAACGCGCCGGAACAGGGCACCGCAACCGCTGCCTCTCTATTTTCCGACGACAACCCTTTTCGGAGAAAACCTGCTCCACTTTCTGACACAACCAACCAAGCTCACATCCCTAACAACGGCGACGCCGAGAACCGCGATGCCGGCGACGAGAAAAAACGCAAGAGGAACAAAGAGAAAATTCCGGCCCTTGATCCAGTTTCTGTAACCGATGTTTTGGATAGCTCGGAGAAGAAGAGGAAACGAGGTTCTGATGAAGGAAGAGAAGGAGGCCTTGAGTTGGGTGCAGAAGCAATTGGGAAAAGAAAGAGAAAAAGGGACGAGGTTGAAAGAGAGTGGGAGGAGAAGAGATATGGGCCGGTGGATGAAGTTCAAAAGGAAGGGATTGAGAGTAAAACTGTTGGGAACAAGAGGAAGACATTGGATGATCCAGCTGATACGATGGTTGCAAAGGAGGGTTTTGATGACGAAGATAAGCTTTTGAGGACTGTCTTTGTTGGGAATTTGCCTCTCAAGGTGAAAAAGAAGATTCTGTTGAAGGAGTTTAAAAAGTTTGGTGAGGTCGAGTCTGTGAGGATTCGTTCTATTCCTTTACAAGATACCAAGAAACCTAGAAAGGGAGCTATCCTTGCGAAGAAAATAAATGATGCCGGAGATAGTGTACATGCATACATTGTTTACAAAACCGAGCAATCGGCACAGGCTTCTTTGTCTCACAACATGTCACTGGTCGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACATAAAGGGGAAAGTGTTCCTCTTTATGACAACAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAGCTTTATCAGTTATTTTGTGGCATATCCAACCTGGAATCAAGTGTAGAAGCTGTCAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCTTATGTGCTATTTAAAACAAAGGAAGCTGCTAAATTTGTTATTAAGAGAAGGAACTTGAAGCTTCGAGACAGAGAGTTGAGACTCTCTCATGCCAAAGAAGATGCTACCCCATCTAAAAGGCCAAACCCATCGTCAACACAAGGTCATACCCCTTCTAAAAGGCCAAACAGATCATCAACACAAGCTCCTGGTACTCCTGCAAAGAAATTTTCAGTGGCTTCACGGTCTCCTTCTAGCAGTGTTAACAGATCAAACAGAAAAGGCAATGCATCTTATCAGGGTCTACGTGCAACCAAATCAGATGTGCAGAAGAAAAGCCAGGGTGGAGAAAAGCCAAAACAACGCCTGACAAAGAGACCTTCAGTGGCTGCCAGAAAGGCTAAAGCAAAATTGCAGGAGAGTGGTGCACAAAAACAAGCAGGGTTAAAACGCAAGCTTGATACTCGTACTCCAGACAGCACCATGCGTAATAAGAAAGTAAAAAAGAACAGGTAG 1545 0.4511 MGKKKPKDPQQTLQTDTDPPPSSIFNKLFGNAPEQGTATAASLFSDDNPFRRKPAPLSDTTNQAHIPNNGDAENRDAGDEKKRKRNKEKIPALDPVSVTDVLDSSEKKRKRGSDEGREGGLELGAEAIGKRKRKRDEVEREWEEKRYGPVDEVQKEGIESKTVGNKRKTLDDPADTMVAKEGFDDEDKLLRTVFVGNLPLKVKKKILLKEFKKFGEVESVRIRSIPLQDTKKPRKGAILAKKINDAGDSVHAYIVYKTEQSAQASLSHNMSLVEGNHIRVDRACPPRKKHKGESVPLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSVEAVRVVRDPHLNVGKGIAYVLFKTKEAAKFVIKRRNLKLRDRELRLSHAKEDATPSKRPNPSSTQGHTPSKRPNRSSTQAPGTPAKKFSVASRSPSSSVNRSNRKGNASYQGLRATKSDVQKKSQGGEKPKQRLTKRPSVAARKAKAKLQESGAQKQAGLKRKLDTRTPDSTMRNKKVKKNR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01426 514 SUPERFAMILY RNA-binding domain, RBD 299 407 IPR035979 GO:0003676
Viun2g01426 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 383 IPR000504 GO:0003723
Viun2g01426 514 MobiDBLite consensus disorder prediction 101 142 - -
Viun2g01426 514 SMART rrm1_1 303 379 IPR000504 GO:0003723
Viun2g01426 514 SMART rrm1_1 192 281 IPR000504 GO:0003723
Viun2g01426 514 MobiDBLite consensus disorder prediction 375 514 - -
Viun2g01426 514 MobiDBLite consensus disorder prediction 12 44 - -
Viun2g01426 514 MobiDBLite consensus disorder prediction 1 142 - -
Viun2g01426 514 MobiDBLite consensus disorder prediction 490 508 - -
Viun2g01426 514 CDD RRM1_RBM34 191 281 - -
Viun2g01426 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 233 IPR000504 GO:0003723
Viun2g01426 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 376 IPR000504 GO:0003723
Viun2g01426 514 CDD RRM2_RBM34 303 379 IPR034221 -
Viun2g01426 514 MobiDBLite consensus disorder prediction 55 69 - -
Viun2g01426 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 285 IPR000504 GO:0003723
Viun2g01426 514 MobiDBLite consensus disorder prediction 453 467 - -
Viun2g01426 514 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 282 442 - -
Viun2g01426 514 SUPERFAMILY RNA-binding domain, RBD 185 291 IPR035979 GO:0003676
Viun2g01426 514 Gene3D - 187 291 IPR012677 -
Viun2g01426 514 MobiDBLite consensus disorder prediction 388 452 - -
Viun2g01426 514 Gene3D - 297 390 IPR012677 -
Viun2g01426 514 MobiDBLite consensus disorder prediction 72 91 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01426 193 368 Eukaryotic Initiation Factors Gene Family AT1G71770 25.140 2.96e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01426 K14837 - gmx:100809622 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01426 2 24754233 24758831 Viun2g01426 2 24754233 24758831 ECH