Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01423 ATGCAAACACCCAACTATGTCTACACCGAAATCAAAGCGGAGAACTCCAAAGTTTCACCACCGCCAACACTGCCATCTCTGTCGGAAATCACCCCGTCGACTTTGATATTCTTCACCATGGCCGTGGCCGGCTTCTGCTTCCTAGGTGTCGCCATCGTCTTCTTCTGCAGGTACTGCTTCAGGAACATCTCCAACACTAACACCCTCGTCCGTCTCTCTCCTCGCGATTCTCCCCCCAGAGGCCTCGACCCTTCTCTGCTAACCACCTTCCCCACCTTCCTCTACGCCACCGTCAAGGATCTCCGCACGGAGAAGGATTACTCACTCGAATGCGCCATTTGCTTGCTGGAGTTCGACGACGACTGCATGCTGCGTCTCTTAACCGCCTGCTGCCACGTCTTCCACCAGGACTGCATCGACTCCTGGCTCCGCTTGCACAAGACTTGCCCCGTTTGCCGCACGGATCTCGATACTCGGGCGAGTAACGCCGACGCGCAGAGACCTCATGACCAAAACGAGGAGAATGCGGAACACGAGAGAAGCGATCACGTGAGCGTTGATGTGAAAGAAGGTGATGACGGAGACGAGAGACACGATGATGGTGATGAGGGAGGTTCGATGAATGTGCGCATGCAGCGTGAGAGGTTTGCAAGTGCACGTTCACACTCGACGGGGCATTCCATAGTTATGGTTAATGATCACGACGACGATGATGCGAAATACACTCTGAGATTGCCACAAGATGTGGCTTTGAAAATTGTAAGAGGGCACCATTACTCCAAGAGTTGTTCTAGTTACAAAGACATTGCAGGATCTTCTGCTGCACCTTGTAGTAATTGTGGTTATGTTGAAACTCTATTGGATAGCTCCAGTAATGGTGCAAATAATAGTTAA 894 0.5157 MQTPNYVYTEIKAENSKVSPPPTLPSLSEITPSTLIFFTMAVAGFCFLGVAIVFFCRYCFRNISNTNTLVRLSPRDSPPRGLDPSLLTTFPTFLYATVKDLRTEKDYSLECAICLLEFDDDCMLRLLTACCHVFHQDCIDSWLRLHKTCPVCRTDLDTRASNADAQRPHDQNEENAEHERSDHVSVDVKEGDDGDERHDDGDEGGSMNVRMQRERFASARSHSTGHSIVMVNDHDDDDAKYTLRLPQDVALKIVRGHHYSKSCSSYKDIAGSSAAPCSNCGYVETLLDSSSNGANNS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01423 297 SUPERFAMILY RING/U-box 98 160 - -
Viun2g01423 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 163 IPR013083 -
Viun2g01423 297 SMART ring_2 111 152 IPR001841 -
Viun2g01423 297 FunFam E3 ubiquitin-protein ligase ATL6 56 159 - -
Viun2g01423 297 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Viun2g01423 297 PANTHER RING FINGER DOMAIN-CONTAINING 28 165 - -
Viun2g01423 297 MobiDBLite consensus disorder prediction 161 209 - -
Viun2g01423 297 Pfam Ring finger domain 110 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01423 Viun-Chr2 24718129 24719257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01423 10 264 Rapid Response to Elicitors AT3G05200 32.959 8.51e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01423 - - vum:124842333 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01423 2 24718129 24719257 Viun3g03098 3 37263025 37266635 PCT