Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun2g01421 | ATGGCTACTTTAGAATCTGCCCTCACCCTGTTCGCACCCCAACGATTTTCGGATAATTATCGTTCGTCTGCAAAACCACCTCACTCCATTAAGCTCAATGCTTCCACTTCCCTTTTCTTCCCTTCCAAGGTCTCTTTCAAATCTGCAAGACTCTGCTTCCACCTATGCTCTGCTCTGCAAGAGCTACCCACAACAGAGAAAACACCTGACCCAACCCAACCAACTAACAACCTCACCAAGCTTTACGTCGCTAACTTGCCTTGGACTCTGTCGCCGGCCGATATCAAGAACCTTTTTGCCCAATGCGGAACCGTAACTGACGTCGAGATAATAAGGAACAAAAAAGGGAGGCACATGGGATATGCCTTCGTTACTATGGATTCCGGAGAAGAGGCTCAGGCTGCTCTTGATAAATTTGATACATATGAATTATCGGAACGGATAATAAGGGTAGAGTTTGCAAAGCAATTGAATAAACCTCCTCCTTCTCCTCCTCCACCTCCTCCAGGTCGTCGTAATCCTAGAGAGACACGACATGTACTTTATGTATCCAACCTAACATGGAAAGCAAGATCTACCCATCTGAGGGAAGTCTTCACTGAAAATTTCAAGACACCAGTTTCAGCCAGAGTTGTCTTTGACAGCCCTGCTAAACGATCAGCTGGGTACGGATTTGTTTCTTTTCTTACTAAGGAGGATGCAGAGGCTGCCATTTCTGCTGTGGACGGGAAGGAGTTAATGGGACGACCCCTTCGCCTAAAATTCAGTGAAAAGAAGGATAAGGAAGCTGGAGGTGGAAAAGAGGAAGATCAAATTAAAGATGCTGGAAGTGAAGATGAAGATCAAAGTTCTGATGCTCAACCAGAAGAGTCATAA | 876 | 0.4543 | MATLESALTLFAPQRFSDNYRSSAKPPHSIKLNASTSLFFPSKVSFKSARLCFHLCSALQELPTTEKTPDPTQPTNNLTKLYVANLPWTLSPADIKNLFAQCGTVTDVEIIRNKKGRHMGYAFVTMDSGEEAQAALDKFDTYELSERIIRVEFAKQLNKPPPSPPPPPPGRRNPRETRHVLYVSNLTWKARSTHLREVFTENFKTPVSARVVFDSPAKRSAGYGFVSFLTKEDAEAAISAVDGKELMGRPLRLKFSEKKDKEAGGGKEEDQIKDAGSEDEDQSSDAQPEES | 291 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun2g01421 | 291 | SMART | rrm1_1 | 80 | 152 | IPR000504 | GO:0003723 | |
Viun2g01421 | 291 | SMART | rrm1_1 | 180 | 254 | IPR000504 | GO:0003723 | |
Viun2g01421 | 291 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 81 | 149 | IPR000504 | GO:0003723 | |
Viun2g01421 | 291 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 181 | 252 | IPR000504 | GO:0003723 | |
Viun2g01421 | 291 | CDD | RRM_SF | 81 | 152 | - | - | |
Viun2g01421 | 291 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 79 | 156 | IPR000504 | GO:0003723 | |
Viun2g01421 | 291 | MobiDBLite | consensus disorder prediction | 154 | 175 | - | - | |
Viun2g01421 | 291 | Gene3D | - | 169 | 288 | IPR012677 | - | |
Viun2g01421 | 291 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 179 | 258 | IPR000504 | GO:0003723 | |
Viun2g01421 | 291 | MobiDBLite | consensus disorder prediction | 252 | 280 | - | - | |
Viun2g01421 | 291 | Gene3D | - | 56 | 163 | IPR012677 | - | |
Viun2g01421 | 291 | SUPERFAMILY | RNA-binding domain, RBD | 67 | 170 | IPR035979 | GO:0003676 | |
Viun2g01421 | 291 | MobiDBLite | consensus disorder prediction | 252 | 291 | - | - | |
Viun2g01421 | 291 | SUPERFAMILY | RNA-binding domain, RBD | 159 | 261 | IPR035979 | GO:0003676 | |
Viun2g01421 | 291 | PANTHER | OS02G0815200 PROTEIN | 39 | 259 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun2g01421 | Viun-Chr2 | 24701495 | 24704524 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun2g01421 | 79 | 290 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 30.093 | 3.50e-17 | 79.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun2g01421 | - | - | vum:124843240 | 523.857 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun2g01421 | 2 | 24701495 | 24704524 | Viun2g01421 | 2 | 24701495 | 24704524 | ECH |