Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01421 ATGGCTACTTTAGAATCTGCCCTCACCCTGTTCGCACCCCAACGATTTTCGGATAATTATCGTTCGTCTGCAAAACCACCTCACTCCATTAAGCTCAATGCTTCCACTTCCCTTTTCTTCCCTTCCAAGGTCTCTTTCAAATCTGCAAGACTCTGCTTCCACCTATGCTCTGCTCTGCAAGAGCTACCCACAACAGAGAAAACACCTGACCCAACCCAACCAACTAACAACCTCACCAAGCTTTACGTCGCTAACTTGCCTTGGACTCTGTCGCCGGCCGATATCAAGAACCTTTTTGCCCAATGCGGAACCGTAACTGACGTCGAGATAATAAGGAACAAAAAAGGGAGGCACATGGGATATGCCTTCGTTACTATGGATTCCGGAGAAGAGGCTCAGGCTGCTCTTGATAAATTTGATACATATGAATTATCGGAACGGATAATAAGGGTAGAGTTTGCAAAGCAATTGAATAAACCTCCTCCTTCTCCTCCTCCACCTCCTCCAGGTCGTCGTAATCCTAGAGAGACACGACATGTACTTTATGTATCCAACCTAACATGGAAAGCAAGATCTACCCATCTGAGGGAAGTCTTCACTGAAAATTTCAAGACACCAGTTTCAGCCAGAGTTGTCTTTGACAGCCCTGCTAAACGATCAGCTGGGTACGGATTTGTTTCTTTTCTTACTAAGGAGGATGCAGAGGCTGCCATTTCTGCTGTGGACGGGAAGGAGTTAATGGGACGACCCCTTCGCCTAAAATTCAGTGAAAAGAAGGATAAGGAAGCTGGAGGTGGAAAAGAGGAAGATCAAATTAAAGATGCTGGAAGTGAAGATGAAGATCAAAGTTCTGATGCTCAACCAGAAGAGTCATAA 876 0.4543 MATLESALTLFAPQRFSDNYRSSAKPPHSIKLNASTSLFFPSKVSFKSARLCFHLCSALQELPTTEKTPDPTQPTNNLTKLYVANLPWTLSPADIKNLFAQCGTVTDVEIIRNKKGRHMGYAFVTMDSGEEAQAALDKFDTYELSERIIRVEFAKQLNKPPPSPPPPPPGRRNPRETRHVLYVSNLTWKARSTHLREVFTENFKTPVSARVVFDSPAKRSAGYGFVSFLTKEDAEAAISAVDGKELMGRPLRLKFSEKKDKEAGGGKEEDQIKDAGSEDEDQSSDAQPEES 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01421 291 SMART rrm1_1 80 152 IPR000504 GO:0003723
Viun2g01421 291 SMART rrm1_1 180 254 IPR000504 GO:0003723
Viun2g01421 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 149 IPR000504 GO:0003723
Viun2g01421 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 252 IPR000504 GO:0003723
Viun2g01421 291 CDD RRM_SF 81 152 - -
Viun2g01421 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Viun2g01421 291 MobiDBLite consensus disorder prediction 154 175 - -
Viun2g01421 291 Gene3D - 169 288 IPR012677 -
Viun2g01421 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 258 IPR000504 GO:0003723
Viun2g01421 291 MobiDBLite consensus disorder prediction 252 280 - -
Viun2g01421 291 Gene3D - 56 163 IPR012677 -
Viun2g01421 291 SUPERFAMILY RNA-binding domain, RBD 67 170 IPR035979 GO:0003676
Viun2g01421 291 MobiDBLite consensus disorder prediction 252 291 - -
Viun2g01421 291 SUPERFAMILY RNA-binding domain, RBD 159 261 IPR035979 GO:0003676
Viun2g01421 291 PANTHER OS02G0815200 PROTEIN 39 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01421 Viun-Chr2 24701495 24704524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01421 79 290 Eukaryotic Initiation Factors Gene Family AT3G16380 30.093 3.50e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01421 - - vum:124843240 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01421 2 24701495 24704524 Viun2g01421 2 24701495 24704524 ECH