Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01411 ATGGCCTCGGATGCTTCCTACGACAAGAACAATGTGTTTCGGAAACTCAAGGCAAAGTCTGAAAACAAGATGTGTTTCGATTGTAATGCCAAAAATCCAACTTGGGCCTCCGTCACCTATGGGATCTTCCTCTGCATCGATTGTTCCGCTGCACATCGTAGTCTCGGTGTCCATGTCAGTTTTGTCAGGCAAGTTAATGTACATGGATTGTCGGAATTAAGAACATTGATTATGTGTTTGTTTTGTAGATCTACAAACTTAGACATGTGGACTCCAGAGCAATTGAAAACCATGAGCCTGGGAGGAAACAACCGTGCGCGAAATTTCTTTAAGCAGCATGGTTGGACTGATGGTGGTAAAATAGAGGCAAAATATACATCGAGAGGTGCAGAGTTATACAGACAAATTCTTTCTAAGGAAGTAGCAAAAAGTATGACAGATAAGGAGGTAGATTCGCCATCATCACCTACTGCTTCTCCGTTTGAACAAGTTGTTGAAGGAATTTCTCAAGTAAAGACTAATGAATCACCAAATGCTTCGCAAAGTCCTGGGATTCCAGAGAGCCCTTCTTCGCCCAAAGCTTCACACACAACAGTTTCTAATACTGTCAAAAAACCTGTTTCTGTTAAGAAAACAAAAAAAGCTGCGGGACTTGGTGCTAGAAAGCTTTCTGGAAAGTCATGTGAGTCTCTGTATGAGCAAAAGCCAGAAGAACCACCAACAGCAGCAAAGAAGCATACACTTTCAGGGTCTTCATCTACATCTCGATTTGAGTATGTAGAAAATGACCAATCATTTGATTTGAATTCTAAAGCTAAGGCTCGCTTAGTAAGGCATGTATCCTTGCCAGAGTCATCAAGCGTCTTTGCAGACTTCGTAATGGATAACGGTTCTCCAAAGGAATTTGGGTCAAATTCATCAAAAGACAAAATTGAGGAGTCCAATGAAGCAAGAAGGAAATTCTCAAATGCTAGATCAATTTCTTCCTCTCAGTTTTTTGGAAATCAAAACAAAGATGCAAATGATTCAAAAGTTATCCTGTCAAAATTTTCATCTTCAACTTCCATTTCTAGTGCTGATCTTTTTGGTAACTCGAGAAACAACTCTTCCAATAATGATGCTGATGCTAATGACCTCCTTAATCGACTATCTTTCCGTGCTTATGAAGACATTTCTTCTCTGAAAAATATTGCTGGTGAGACTGGAAAGAAACTCAGTTTCTTGGCCTCCAATCTGATAACAGATATTCAAGATAGAATAATCTAA 1266 0.3957 MASDASYDKNNVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAAHRSLGVHVSFVRQVNVHGLSELRTLIMCLFCRSTNLDMWTPEQLKTMSLGGNNRARNFFKQHGWTDGGKIEAKYTSRGAELYRQILSKEVAKSMTDKEVDSPSSPTASPFEQVVEGISQVKTNESPNASQSPGIPESPSSPKASHTTVSNTVKKPVSVKKTKKAAGLGARKLSGKSCESLYEQKPEEPPTAAKKHTLSGSSSTSRFEYVENDQSFDLNSKAKARLVRHVSLPESSSVFADFVMDNGSPKEFGSNSSKDKIEESNEARRKFSNARSISSSQFFGNQNKDANDSKVILSKFSSSTSISSADLFGNSRNNSSNNDADANDLLNRLSFRAYEDISSLKNIAGETGKKLSFLASNLITDIQDRII 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01411 421 CDD ArfGap_ArfGap2_3_like 8 143 - -
Viun2g01411 421 SUPERFAMILY ArfGap/RecO-like zinc finger 81 145 IPR037278 -
Viun2g01411 421 MobiDBLite consensus disorder prediction 174 206 - -
Viun2g01411 421 Gene3D Arf GTPase activating protein 1 158 IPR038508 -
Viun2g01411 421 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Viun2g01411 421 PRINTS HIV Rev interacting protein signature 82 103 IPR001164 GO:0005096
Viun2g01411 421 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Viun2g01411 421 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 113 IPR001164 GO:0005096
Viun2g01411 421 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 420 - -
Viun2g01411 421 SMART arf_gap_3 10 146 IPR001164 GO:0005096
Viun2g01411 421 Pfam Putative GTPase activating protein for Arf 11 69 IPR001164 GO:0005096
Viun2g01411 421 MobiDBLite consensus disorder prediction 174 256 - -
Viun2g01411 421 SUPERFAMILY ArfGap/RecO-like zinc finger 10 71 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01411 Viun-Chr2 24587369 24590570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01411 13 111 C2H2 Transcription Factor Family AT4G21160 34.000 1.66e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01411 K12493 K11855 gmx:100789796 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01411 2 24587369 24590570 Viun2g01411 2 24587369 24590570 ECH
Viun2g01411 2 24587369 24590570 Viun3g03381 3 40796160 40799101 PCT