Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01410 ATGAATCTCTGGACGGACGATAACTCCTCTGTTATGGAGGCTTTCATGTCCTCCTCCGATCTCTCCTCCATATGGCCTCCACCAGCGCCGCCGCAATCCGCCGCCGTCTTCAACCAGGACACGCTCCAGCACCGCCTCCAGGCCCTCATCGAGGGCGCCAGGGAGAGCTGGACCTACGCTATCTTTTGGCAGTCCTCTTACGACTATTCAGGCTCTACGCTCCTTGGCTGGGGCGACGGTTACTACAAAGGCGACGATGACAAGGCCAAGGCCAAGGCCAAAGCTAAAGCCACCTCCGCCGCCGAGCAGGACCACCGCAAGAAGGTCCTCCGCGAGCTCAACTCCCTCATCTCCGGCTCTTCCGCCACCGCCTCCGACGACGTAGACGAGGAGGTCACAGACACCGAGTGGTTCTTCCTTGTCTCCATGACCCAGTCCTTCGTCAACGGCGCCGGCTTGCCCGGCCAGGCCTTCTTCAATTCCAACCCCGTCTGGGTCACCGGCTGCGACCGCCTCTCCGCCTCCCCCTGCGAGAGAGCCCGCCAAGGACAAGTCTTTGGCCTCCAAACCCTAGTCTGCATACCCTCCGCAAACGGCGTCGTTGAGCTGGGGTCTACCGAGTTAATTTACCAGAACCCGGATCTGATGAACAAGGTCAAGGTGCTCTTCAATTTTAGCAACAACAACTTCGATATGGGTTCTTCTTGGCCTGCTAACAGCGCCGATCAAGGAGAAAACGACCCCTCCACGCTCTGGCTCAACGATCCTGAAGTTAGGGATTCCATTAACACTGTCGCAGCTACCCCTTCTGTATCCGTTTCTGTTCCCCCTCATAACAGTACTCACGGGATTTCAAAGACGATGCAGTTGGAGAGTTCTATTCAAACCCCCGGTTCCAGTACCTTAACCGAAACCCCAAGCTCTATCCACGCTGTTCCACAGAACCAGAGCGTGTTCTCCAGAGAATTGAACTTCTCTGAGTACGGTTTTGACCCCAAGAGTGCCAATACTAACAATCAGAATTCCTTGAAGCCCGAATCCTGCGAGATTCTCAGCTTCAGCGATAGCAAGAGAACCTCTTACGGCGGCGGGGGCGGGGGCGGGGGCGTCAATGGTAATTCCAATTCAAATTCAAATTTCTTCTCTGGTCAATCACCGTTTGTTGCTGTTGCGGATGATAACAACAATAACAACAACGGGAAGCGAAGGTCACCGAATTCGCGAGGCAGCAACGACGACGGAATGCTTTCGTTCACCTCCCGCGCGATTCTTCCGGCCACTAATTTGAAGTCTGCCGGTGGCGGCGATTCCGACCACTCGGATCTGGAAGCGTCAGTGGTAAAGGACCCTGTTGTGGAGCCGGAGAAGCGTCCCCGGAAGAGAGGGCGGAAGCCGGCGAACGGAAGAGAGGAACCGTTGAACCACGTGGAAGCGGAGAGGCAGAGGAGGGAGAAACTGAATCAGAGGTTCTACGCGCTTCGTGCTGTGGTTCCCAACGTGTCCAAGATGGACAAAGCGTCGCTTCTCGGTGATGCAATATCTTACATAACGGAGCTGAAGTCCAAGCTTCAAACTCTGGAATCAGATAAAGATGGGTTGCAGAAGCAACTTGAAGGAGTGAAGAAGGAACTCGAGAAATCAAGCGACAACGTTTCTTCTAATCATATGAAACACGCGGGTAATAGTAACATTAAGTCGTCGAATCAGGCGTTGATTGACTTGGACATCGACGTTAAGATTATTGGATGGGACGCGATGATAAGGATCCAATGCAGCAAGAAGAACCACCCCGCGGCGAGGTTGATGGCGGCGCTGATGGAGTTGGACTTGGACGTTCACCACGCCAGCGTGTCGGTAGTTAACGATTTGATGATCCAGCAAGCGACGGTGAAGATGGGGAGTAGGTTTTACACGCAGGAGCAGCTTCGTTCGGCCCTGTCGGCTAAGGTTGGGGATGTACGATGA 1965 0.5435 MNLWTDDNSSVMEAFMSSSDLSSIWPPPAPPQSAAVFNQDTLQHRLQALIEGARESWTYAIFWQSSYDYSGSTLLGWGDGYYKGDDDKAKAKAKAKATSAAEQDHRKKVLRELNSLISGSSATASDDVDEEVTDTEWFFLVSMTQSFVNGAGLPGQAFFNSNPVWVTGCDRLSASPCERARQGQVFGLQTLVCIPSANGVVELGSTELIYQNPDLMNKVKVLFNFSNNNFDMGSSWPANSADQGENDPSTLWLNDPEVRDSINTVAATPSVSVSVPPHNSTHGISKTMQLESSIQTPGSSTLTETPSSIHAVPQNQSVFSRELNFSEYGFDPKSANTNNQNSLKPESCEILSFSDSKRTSYGGGGGGGGVNGNSNSNSNFFSGQSPFVAVADDNNNNNNGKRRSPNSRGSNDDGMLSFTSRAILPATNLKSAGGGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLESDKDGLQKQLEGVKKELEKSSDNVSSNHMKHAGNSNIKSSNQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRSALSAKVGDVR 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01410 654 MobiDBLite consensus disorder prediction 369 416 - -
Viun2g01410 654 MobiDBLite consensus disorder prediction 441 480 - -
Viun2g01410 654 PANTHER MYC 12 649 IPR045084 GO:0003700|GO:0006355
Viun2g01410 654 CDD bHLH_AtAIB_like 467 543 - -
Viun2g01410 654 Gene3D - 462 551 IPR036638 GO:0046983
Viun2g01410 654 MobiDBLite consensus disorder prediction 359 416 - -
Viun2g01410 654 Coils Coil 516 550 - -
Viun2g01410 654 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
Viun2g01410 654 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 473 539 IPR036638 GO:0046983
Viun2g01410 654 SMART finulus 476 525 IPR011598 GO:0046983
Viun2g01410 654 FunFam Transcription factor bHLH13 463 537 - -
Viun2g01410 654 MobiDBLite consensus disorder prediction 270 315 - -
Viun2g01410 654 Pfam Helix-loop-helix DNA-binding domain 474 519 IPR011598 GO:0046983
Viun2g01410 654 MobiDBLite consensus disorder prediction 428 480 - -
Viun2g01410 654 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 223 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01410 Viun-Chr2 24571205 24573765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01410 1 651 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.612 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun2g01410 bHLH-MYC_N 3.2e-56 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01410 K13422 - gmx:100790168 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01410 2 24571205 24573765 Viun2g01410 2 24571205 24573765 ECH