Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01379 ATGTCGCCGCCGGCGGTGGTAACAGAGGAGGATGGGCTGAGCAAGGTGTCGTCGACTGTAGCTTCTGGTTCTTCGCAGTCCTTGGATTGTTTCTCTCAGAATGGGGCTGGATTGAAAGAAAGGAATTACTTAGGGTTGTCTGATTGCTCATCAGTGGATAGCTGTGCTTCTACTGTGCCAGGCTTGGGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACGGAGTTGAGGCTGGGTCTTCCCGGGTCACAGTCACCTGAAAGGGATCCGGATCTTTTCTCTTTAAGCTCAGCAAAGCTCGACGAGAAGCCACTGTTCCCTTTGGTTCCTACTAAAGACGGGATTTGCTTGTCGTCCCAGAAAACTGTTGTTTCCGGCAACAAGAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTTACTGGTAATACGGGGATGAACGCAATGCTATCACCTAGGCCTTCTGGTGCTCAGCCTTCTGCAATGAAAGAAATTCCAAGCAAGTTGCAAGAACGGCCTTGTTCAGCTAATAATGGAACCAGTCATAACCATACAGGTGCTTCTATAAGTGGCAGTGCACCGGCTTCTAAGGCACAGGTTGTCGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCCATGGCCACCACATCCAACAAGAACAATGATGAAGTGGATGGAAAACCAGGTGGTGGTGCTCTCTTCGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAAGTAGATCTAAGAAGTTATTCAACATATCAGGAGCTATCTTCTGCACTTGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGTAAGCTGAGGGATCTTCTGCACGGTTCAGAGTATGTCGTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCATGGGAAATGTTCATTGATACTTGCAAAAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGACTTAG 1074 0.4711 MSPPAVVTEEDGLSKVSSTVASGSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTVPGLGDEKKENMNLKATELRLGLPGSQSPERDPDLFSLSSAKLDEKPLFPLVPTKDGICLSSQKTVVSGNKRGFADTMDGFSQGKFTGNTGMNAMLSPRPSGAQPSAMKEIPSKLQERPCSANNGTSHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTSNKNNDEVDGKPGGGALFVKVSMDGAPYLRKVDLRSYSTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVVTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01379 357 MobiDBLite consensus disorder prediction 1 26 - -
Viun2g01379 357 MobiDBLite consensus disorder prediction 175 199 - -
Viun2g01379 357 MobiDBLite consensus disorder prediction 214 228 - -
Viun2g01379 357 Pfam AUX/IAA family 75 348 IPR033389 -
Viun2g01379 357 MobiDBLite consensus disorder prediction 155 201 - -
Viun2g01379 357 MobiDBLite consensus disorder prediction 12 26 - -
Viun2g01379 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 70 344 IPR003311 GO:0005634|GO:0006355
Viun2g01379 357 FunFam Auxin-responsive protein 232 349 - -
Viun2g01379 357 Gene3D - 234 351 - -
Viun2g01379 357 ProSiteProfiles PB1 domain profile. 237 341 IPR000270 GO:0005515
Viun2g01379 357 MobiDBLite consensus disorder prediction 213 233 - -
Viun2g01379 357 SUPERFAMILY CAD & PB1 domains 234 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01379 Viun-Chr2 24412009 24416456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01379 239 342 B3 DNA Binding Superfamily AT5G37020 32.692 6.00e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun2g01379 AUX_IAA 7.3e-91 CL0072