Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01376 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTCCTTGCTCCAAGAAAAGACACTTGGAGTGCTTTGTCCACTGGGTTGAATGAGTTACTCCCTAGTGCTTGGAGTTTTGACTCTTTTGATGACAACCATGGTTTAGCCACTTTGAATCCTTCTTTTGCTGCATTTTCAACCCCACTAGACCACAGGTTTGAATGTCCTTATGGAAGTGAAGCAACCCACCCTTTTGTTGATGGGTTCTCATTGCCAGAGCTTGATTCATCGTACACCAGAAATGATGAGTCAGCACCACTTCTGCCACAAGAAGATAACCCATCATTGGAGGATGAAGAGTTTGGCTTTCTGGGAAGTGAAAAACAGAGTTTGGAACAAGCAACAAATGGCTGCAAAGTTGAGGAACAGGTGACAGAGATTCCAGTCTTCAACGTGGGTTTGTGTGCAGAGAAAAAGCTCAAATCCAAAAAGCTGGAAGGACAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCGAAGATTAGCAAGATGGACAGGACCTCCATTCTGGGAGACACCATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGTAAGTTGCAAGAAGAAGAAATGGAGGAGGGAACAAATCATATAAACCTCTTGGGAAATTCTAAGGAGCTAAAGCCAAATGAAGCAATGGTAAGAAATTCCCCTAAGTTTGATGTTGAGAGAAGAGAGCATGACACAAGGATTAGCATCTGCTGTGCCACAAAGCTTGGATTACTCCTGTCCACAGTGAACACCCTAGAAGCATTAGGCCTTGAGATTCATCAGTGTGTTATAAGCAACTTCAATGATTTTTCAATGCAAGCAACCTGTTCTGAGGTAGCTGAGCAGAGAAATTGTACGAGCCCGGAAGATATAAAGCAAGCACTGTTCAGAAATGCAGGTTATGGTGGAAGATGTCTGTAA 996 0.4317 MELSQLGFLDELLAPRKDTWSALSTGLNELLPSAWSFDSFDDNHGLATLNPSFAAFSTPLDHRFECPYGSEATHPFVDGFSLPELDSSYTRNDESAPLLPQEDNPSLEDEEFGFLGSEKQSLEQATNGCKVEEQVTEIPVFNVGLCAEKKLKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGTNHINLLGNSKELKPNEAMVRNSPKFDVERREHDTRISICCATKLGLLLSTVNTLEALGLEIHQCVISNFNDFSMQATCSEVAEQRNCTSPEDIKQALFRNAGYGGRCL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01376 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 218 IPR036638 GO:0046983
Viun2g01376 331 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Viun2g01376 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Viun2g01376 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 79 325 - -
Viun2g01376 331 SMART finulus 164 213 IPR011598 GO:0046983
Viun2g01376 331 Gene3D - 149 223 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01376 Viun-Chr2 24383120 24385108 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01376 149 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 70.109 4.69e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun2g01376 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01376 - - gmx:100806571 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01376 2 24383120 24385108 Viun3g03136 3 37703035 37704774 PCT