Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01371 ATGGCTCAAGCCAATGGCCACCACCACCATCGCGTTGAAACAGTGATTGACATAAGGAAACCACCGGTGAGCTTCACCGGGGGTCTTGTGTTCGAGTGCCTCACTTACACTGTGACAAAAAAGGCCAAAGTGGATGGGAATTGGTCGAGTGAAGAGGTGGACTTGCTGCATGATATCACTAGTTATGCACCAAAGGGTTGTATCACTGCAGTGATGGGTCCTAGTGGTGCAGGAAAGTCCACTCTCTTGGATGGTCTTGCTGGGAGAATTGCTAGTGGAAGCCTCAAAGGGAAGGTTTCGTTGGATGGTGCAACCATGAATGCAAGTTTGATCAAAAGAAGTTCTGCATATATCATGCAGGAAGATAGGCTTTTCCCTATGCTAACTGTTTATGAGACTTTCATGTTTGCTGCTGATTTTCGCCTTGGACCACTCTCTCTTGCTGATAAGAAACAGAGGGTGGAGAAGCTCATTGACCAGCTTGGCTTAACGTCATCTCGGAACACCTACATAGGAGATGAAGGGACAAGAGGAGTGTCCGGCGGAGAGCGGCGGCGCGTGTCAATCGGCGTGGACATAATCCACGGCCCATCGCTTCTCTTTCTGGACGAGCCAACCTCAGGGCTAGACTCCACCAGCGCCCACAGCGTGATCGAGAAAGTGCACGACATCGCACGCAGCGGCAGCACCGTCATCCTCACCATCCACCAGCCCTCGTCCAGAATCCAGCTCCTCCTCGACCACCTCATCATCCTCGCACGGGGCCAGCTCATGTTTCAAGGGTCGCCGCAAGACGTGACCCTCCACTTGTCACGCATGCCACGCAAAGTCCCCAAGGGAGAGAACCCCATTGAAAGTCTCATTGACGTGATCCAAGAGTACGATCAGAGTGAGGTTGGAGTCGAAGCACTTGCAGAGTTTGCACGCACTGGGGTCAAACCACCTCCTTTATCCAACCACCCTCATTCAGTGTCCACTGTTGCACCCTCTTATGCCAATTCCTCGCACCTTAGCCACAGGTTTGAGGAGAAGTCTGCGGAGTTTTCTCACTCCTCGCAGGTGAGTAGAAGGGCAATGGACGATTTTGATCACAGTCTCAGAAGTCCCTATAACAACACTTCCATGTCGTGGAGCACTGGGAATAGTGCAGCATTTCTCAAGTTCACACCAGCACGGCTTAAGAATGATCACAAGCTCCACAATACCACAAGAAACAATACTTCACCTGGCTTCTACACGTACTCGAGTGAAATCTTTCAAGCCACTCCAACACCACGCAGCAGTGACTACACAGTGAATGAGAATGACTACCTCACTCCCTCAAATGGCACAGAAGAACACCTTGGTCCAAAGTTTGTAAATTCTTACATAACGGAGATATGGATACTCATTCGCCGCAACTTCATAAACATAAGGCGCACCCCTGAGCTTTTTCTCTCAAGATTGATGGTTCTCACCTTCATGGGCTTCATGATGGCCACCATGTTCCACAACCCTAGAAAAGATTTGCAAGGAATCACCAACCGCCTCAGCTTCTTCATCTTCACAGTGTGCCTCTTCTTCTTCTCTTCCAACGATGCTGTCCCAGCCTTCATCCAAGAAAGGTTCATCTTCATAAGGGAAACTTCTCACAATGCCTACAGAGCTTCCACTTACACCATTGCAGGCATAATCACTCACACGCCATTTATTCTTCTCCAAGCAGCTGTCTATGCAGGCATTGTTTGGTTTGCCCTAAAACTCAGAGGCCCTTTTCTTTACTTCTTGCTTGTTCTCTTTGTTTCTCTTCTGTCAACAAATTCATTCGTGGTGTTTGTGAGCTCAGTGGTGCCAAACTACATATTGGGTTATGCTATGGTTATTGCCTTCACAGCCTTGTTCTTCTTGTTCTGTGGATACTTCTTGAGCAGCCATGACATTCCCCGTTACTGGCGTTGGATGAACACAATTTCAACGATGACATACCCTTATGAAGGGCTTTTGATGAACCAGTACCAGGTGAACGATACCTTTGGATATATGGATGGAGTACCCATTACCGGTTTTCAGATCTTGGAGAGTCTACACATCAAGACAGATGGACGTAGGAAGAGAACAGTTGTGCTTATAATGTTTGGTTGGGCTGTGCTATACAGGGTTTTATTTTATCTAGTCCTTCGTTTTGCATCGAAAAACCAGAGGTCGTAG 2187 0.4819 MAQANGHHHHRVETVIDIRKPPVSFTGGLVFECLTYTVTKKAKVDGNWSSEEVDLLHDITSYAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVSLDGATMNASLIKRSSAYIMQEDRLFPMLTVYETFMFAADFRLGPLSLADKKQRVEKLIDQLGLTSSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSAHSVIEKVHDIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGSPQDVTLHLSRMPRKVPKGENPIESLIDVIQEYDQSEVGVEALAEFARTGVKPPPLSNHPHSVSTVAPSYANSSHLSHRFEEKSAEFSHSSQVSRRAMDDFDHSLRSPYNNTSMSWSTGNSAAFLKFTPARLKNDHKLHNTTRNNTSPGFYTYSSEIFQATPTPRSSDYTVNENDYLTPSNGTEEHLGPKFVNSYITEIWILIRRNFINIRRTPELFLSRLMVLTFMGFMMATMFHNPRKDLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASTYTIAGIITHTPFILLQAAVYAGIVWFALKLRGPFLYFLLVLFVSLLSTNSFVVFVSSVVPNYILGYAMVIAFTALFFLFCGYFLSSHDIPRYWRWMNTISTMTYPYEGLLMNQYQVNDTFGYMDGVPITGFQILESLHIKTDGRRKRTVVLIMFGWAVLYRVLFYLVLRFASKNQRS 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01371 728 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 29 279 IPR003439 GO:0005524
Viun2g01371 728 SMART AAA_5 65 263 IPR003593 GO:0016887
Viun2g01371 728 FunFam ABC transporter G family member 6 39 277 - -
Viun2g01371 728 Pfam ABC transporter 56 207 IPR003439 GO:0005524
Viun2g01371 728 Gene3D - 43 273 IPR027417 -
Viun2g01371 728 ProSitePatterns ABC transporters family signature. 179 193 IPR017871 GO:0005524|GO:0016887
Viun2g01371 728 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 25 715 - -
Viun2g01371 728 Pfam ABC-2 type transporter 459 665 IPR013525 GO:0016020|GO:0140359
Viun2g01371 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 267 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01371 Viun-Chr2 24325478 24330581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01371 49 355 Calmodulin-binding Proteins AT2G36910 24.759 3.44e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01371 K05681 - gmx:100804809 1207.59