Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01364 ATGGGAAGGGGGAAGATTGTGATTGAAAGGATCGACAATTCCACCAGCCGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCCAAAGAGCTTGCAATCCTCTGTGATGCACAAGTTGGTCTTCTCATATTCTCCAGCACGGGAAAGCTTTACGAGTATGCCAGCACCAGCATGAAATCCATAATTGAAAGATACAACGCATGCAAGGAAGAACAACACCATCAGATAAATCCAGAAGCCGAAGTCAAGTTTTGGCAGAGGGAGGCAGAGATTCTAAGGCAACAGTTACAGATTCTACAAGAAAACCATCGGCAAATGATGGGAGAACAACTTTATGGTCTGAGTGTGAGAAACCTACAAGATCTAGAGAATCAACTGGAAATGAGCCTCCAAGGTGTCCGTATGAAAAAGGAACAAATTCTAAAAGATGAAATCCAAGAGCTGAACCGGAAGGGAAACCTTATCTTCCAGGAAAATGTGGAACTTTACAAGAAGGTGTATGGTACAACAGATACAGCCACAACAAGCAGAAATGCATTTGTTCCTCTTCCATTTGGTATGCATGCAGGAGGGCATCCACAAGAATTAGTCCAACTTCAGTTATGCCAGCCTGAACAAGAAGCTTATGAGACATCAGACACTGCCACAAAATAA 666 0.4294 MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLLIFSSTGKLYEYASTSMKSIIERYNACKEEQHHQINPEAEVKFWQREAEILRQQLQILQENHRQMMGEQLYGLSVRNLQDLENQLEMSLQGVRMKKEQILKDEIQELNRKGNLIFQENVELYKKVYGTTDTATTSRNAFVPLPFGMHAGGHPQELVQLQLCQPEQEAYETSDTATK 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01364 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun2g01364 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun2g01364 221 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Viun2g01364 221 Coils Coil 123 143 - -
Viun2g01364 221 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Viun2g01364 221 Coils Coil 86 113 - -
Viun2g01364 221 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun2g01364 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun2g01364 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Viun2g01364 221 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Viun2g01364 221 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Viun2g01364 221 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun2g01364 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun2g01364 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun2g01364 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun2g01364 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01364 Viun-Chr2 24279642 24289127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01364 1 220 MADS-box Gene Family AT4G37940 61.818 3.09e-92 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun2g01364 K-box 5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01364 K09264 - gmx:100778427 395.971