Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun2g01360 | ATGAAGGTGACATATCATGTGAGGAAACAATTTTCCACCTACTGCTGCTTTAAACTGGTTCTCCACCTCAGTTTACTCTTGCTCACTGCCTCTTCTGAACCTTCAACCGTCTTCAACAACCTAGCAGCGAGGCCTTCACGTCCTCCGGTGAAGCTGAATACCGAAAATCCTCACCAGGTGGTGATTGGCAACGGCATCGTTTCTTTCAACTTGTCAAAACCCAAAGGGCACATCATTGGAATATATACTGGAATTACCAATCTACTTGAGTCTAAAAATAAAGAAAATGATAGAGGATACCTGGACGTCGTTTGGAACGAAAAGGGAAAAGCTGGGAAGTATCAGAGAGTTGTTGGGACAAATTTCTCAGTCATCGTAGCAAACGAGAACATAGTGGAGGTCTCATTTTCAAGAACATGGACAGCTTCCATGAAAGGCTCAAGTGTCCCCATAAATATAGACCACAGGTATATATTGCGAAGAGGCGATTCTGGTTTTTATTCATACGTAATATTTGAAAGAACACCAGGATTACCTGCGGCGGAGGTTTATCAAGCTAGGATTGTTTTCAAACTCAACAAAGCCAGGTTTCATTACCTCGCCATATCCGATACTAGACAAAGGAACATGCCTTCTCAGAGCGACAGAGAACTGGGTACACCCTTGGAATATCCTGAAGCTGTTCTCTTAAATCATCCATCTGACTCACAATTTAAGGGAGAGGTGGATGACAAATACCAATATTCGAGTGAAAACAAAGATAGCGGTGTGCATGGTTGGATTGCCAAGGATGATATAGCAGCAGCAGCAGAAGGTTTTTGGGTGATAACTCCGAGTAATGAGTTCCGCAGTGCTGGCCCTATCAAGCAAGAGTTAACCTCTCATGTTGGTCCAACAACTCTTTCCATGTTCACAAGCACTCACTACGGTGGCAAAGATGTAACCATGAATTTTGGTGAAGGGGAGACTTATAAAAAAGTTTTTGGCCCCATTTTTGTTTATCTTAACTCTTCTCCGAACAAAGCTCGGTTTCAGTCTCTGTGGTCAGATGCTGTAAAACAGTTATCCGAAGAAGTGAGAAGATGGCCTTATGATTTCGTTGGATCGAAAGATTTCATTCCACCCAATCAACGGGGAAAAGTGTCAGGAACACTACAAGTCCAAGATCGAACAAGAAAAGCTCAACCTGCTAAAAATGCTTACGTTGGACTAGCTTTGCCTGGAAATGCAGGATCATGGCAGAAGGAATGTAAGGGTTATCAATTCTGGACTCAAACTGATATAAATGGACATTTCTTAATTGAAAATGTTGTACCTGGAGATTACAAATTGTATGCATGGGTTCATGGCTTTATTGGAGATTATATATATCCAGCTAAGATTTCCATCAAACCAGGGGGAAACATCAACTTGGACTCACTTGTTTATTATCCTCCAAGAAATGGTCCAACTCTATGGGAAATTGGGATCCCTGATCGCTCAGCTGCAGAATTCTATGTACCAGACCCTGACCCTGGTTTCAGGAACAAACTATACCCCAGCAATGGCCCAGACAAGTTTAGGCAATATGGCTTGTGGGCACGTTACAGTGAGTTATATCCAAAAAACGATCTCATTTACACCGTCGGTGTTTCAGACTATCATAAGGATTGGTTTTTTGCTCATGTTACCAGGAGGACAGAAGAAAAAACATACATGCCAACCACATGGCAGATTCGATTCCAGCTTCAAAATATCATAAAGGGAGGAAACTACACACTACAACTGGCCATTGCAGCCGCTACTATATCTAAATTGAAGGTTAGGTTCAACGACCCGAATGCAGAGCGTCCTCACTTCTCAACAAAGCTAATTGGCAATGACAATGCCATAGCAAGGCACGGAATCCATGGATTGTATAGTTTGTATAGTGTAGGTGTAGATAGTGATCAATTGGTAAAAGGAGAGAACATCATCTATTTGACACAGTCATTTGCAGAAGGTCCTTTCATGGGAGTTATGTATGATTATATTCGCTTAGAAAGTCCTCCAACGGCTACTGAACCTTGTGCATAG | 2055 | 0.4209 | MKVTYHVRKQFSTYCCFKLVLHLSLLLLTASSEPSTVFNNLAARPSRPPVKLNTENPHQVVIGNGIVSFNLSKPKGHIIGIYTGITNLLESKNKENDRGYLDVVWNEKGKAGKYQRVVGTNFSVIVANENIVEVSFSRTWTASMKGSSVPINIDHRYILRRGDSGFYSYVIFERTPGLPAAEVYQARIVFKLNKARFHYLAISDTRQRNMPSQSDRELGTPLEYPEAVLLNHPSDSQFKGEVDDKYQYSSENKDSGVHGWIAKDDIAAAAEGFWVITPSNEFRSAGPIKQELTSHVGPTTLSMFTSTHYGGKDVTMNFGEGETYKKVFGPIFVYLNSSPNKARFQSLWSDAVKQLSEEVRRWPYDFVGSKDFIPPNQRGKVSGTLQVQDRTRKAQPAKNAYVGLALPGNAGSWQKECKGYQFWTQTDINGHFLIENVVPGDYKLYAWVHGFIGDYIYPAKISIKPGGNINLDSLVYYPPRNGPTLWEIGIPDRSAAEFYVPDPDPGFRNKLYPSNGPDKFRQYGLWARYSELYPKNDLIYTVGVSDYHKDWFFAHVTRRTEEKTYMPTTWQIRFQLQNIIKGGNYTLQLAIAAATISKLKVRFNDPNAERPHFSTKLIGNDNAIARHGIHGLYSLYSVGVDSDQLVKGENIIYLTQSFAEGPFMGVMYDYIRLESPPTATEPCA | 684 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun2g01360 | 684 | CDD | RGL4_M | 377 | 474 | IPR029413 | - | |
Viun2g01360 | 684 | CDD | RGL4_C | 486 | 674 | - | - | |
Viun2g01360 | 684 | CDD | RGL4_N | 59 | 343 | - | - | |
Viun2g01360 | 684 | Gene3D | - | 373 | 472 | - | - | |
Viun2g01360 | 684 | Pfam | Polysaccharide lyase family 4, domain III | 484 | 673 | IPR029411 | - | |
Viun2g01360 | 684 | SUPERFAMILY | Galactose mutarotase-like | 54 | 339 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Viun2g01360 | 684 | FunFam | Rhamnogalacturonate lyase B | 374 | 471 | - | - | |
Viun2g01360 | 684 | SUPERFAMILY | Starch-binding domain-like | 373 | 473 | IPR013784 | GO:0030246 | |
Viun2g01360 | 684 | Pfam | Polysaccharide lyase family 4, domain II | 398 | 470 | IPR029413 | - | |
Viun2g01360 | 684 | SUPERFAMILY | Galactose-binding domain-like | 481 | 674 | IPR008979 | - | |
Viun2g01360 | 684 | Pfam | Rhamnogalacturonate lyase family | 47 | 242 | IPR010325 | - | |
Viun2g01360 | 684 | Gene3D | - | 53 | 353 | IPR014718 | GO:0030246 | |
Viun2g01360 | 684 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 53 | 677 | - | - | |
Viun2g01360 | 684 | Gene3D | - | 482 | 674 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun2g01360 | Viun-Chr2 | 24244784 | 24250487 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun2g01360 | 50 | 676 | Polysaccharide Lyase | AT1G09890 | 55.678 | 0.0 | 697 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun2g01360 | K18195 | - | gmx:100781089 | 1011.13 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun2g01360 | 2 | 24244784 | 24250487 | Viun3g03150 | 3 | 37826391 | 37831622 | PCT |