Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01360 ATGAAGGTGACATATCATGTGAGGAAACAATTTTCCACCTACTGCTGCTTTAAACTGGTTCTCCACCTCAGTTTACTCTTGCTCACTGCCTCTTCTGAACCTTCAACCGTCTTCAACAACCTAGCAGCGAGGCCTTCACGTCCTCCGGTGAAGCTGAATACCGAAAATCCTCACCAGGTGGTGATTGGCAACGGCATCGTTTCTTTCAACTTGTCAAAACCCAAAGGGCACATCATTGGAATATATACTGGAATTACCAATCTACTTGAGTCTAAAAATAAAGAAAATGATAGAGGATACCTGGACGTCGTTTGGAACGAAAAGGGAAAAGCTGGGAAGTATCAGAGAGTTGTTGGGACAAATTTCTCAGTCATCGTAGCAAACGAGAACATAGTGGAGGTCTCATTTTCAAGAACATGGACAGCTTCCATGAAAGGCTCAAGTGTCCCCATAAATATAGACCACAGGTATATATTGCGAAGAGGCGATTCTGGTTTTTATTCATACGTAATATTTGAAAGAACACCAGGATTACCTGCGGCGGAGGTTTATCAAGCTAGGATTGTTTTCAAACTCAACAAAGCCAGGTTTCATTACCTCGCCATATCCGATACTAGACAAAGGAACATGCCTTCTCAGAGCGACAGAGAACTGGGTACACCCTTGGAATATCCTGAAGCTGTTCTCTTAAATCATCCATCTGACTCACAATTTAAGGGAGAGGTGGATGACAAATACCAATATTCGAGTGAAAACAAAGATAGCGGTGTGCATGGTTGGATTGCCAAGGATGATATAGCAGCAGCAGCAGAAGGTTTTTGGGTGATAACTCCGAGTAATGAGTTCCGCAGTGCTGGCCCTATCAAGCAAGAGTTAACCTCTCATGTTGGTCCAACAACTCTTTCCATGTTCACAAGCACTCACTACGGTGGCAAAGATGTAACCATGAATTTTGGTGAAGGGGAGACTTATAAAAAAGTTTTTGGCCCCATTTTTGTTTATCTTAACTCTTCTCCGAACAAAGCTCGGTTTCAGTCTCTGTGGTCAGATGCTGTAAAACAGTTATCCGAAGAAGTGAGAAGATGGCCTTATGATTTCGTTGGATCGAAAGATTTCATTCCACCCAATCAACGGGGAAAAGTGTCAGGAACACTACAAGTCCAAGATCGAACAAGAAAAGCTCAACCTGCTAAAAATGCTTACGTTGGACTAGCTTTGCCTGGAAATGCAGGATCATGGCAGAAGGAATGTAAGGGTTATCAATTCTGGACTCAAACTGATATAAATGGACATTTCTTAATTGAAAATGTTGTACCTGGAGATTACAAATTGTATGCATGGGTTCATGGCTTTATTGGAGATTATATATATCCAGCTAAGATTTCCATCAAACCAGGGGGAAACATCAACTTGGACTCACTTGTTTATTATCCTCCAAGAAATGGTCCAACTCTATGGGAAATTGGGATCCCTGATCGCTCAGCTGCAGAATTCTATGTACCAGACCCTGACCCTGGTTTCAGGAACAAACTATACCCCAGCAATGGCCCAGACAAGTTTAGGCAATATGGCTTGTGGGCACGTTACAGTGAGTTATATCCAAAAAACGATCTCATTTACACCGTCGGTGTTTCAGACTATCATAAGGATTGGTTTTTTGCTCATGTTACCAGGAGGACAGAAGAAAAAACATACATGCCAACCACATGGCAGATTCGATTCCAGCTTCAAAATATCATAAAGGGAGGAAACTACACACTACAACTGGCCATTGCAGCCGCTACTATATCTAAATTGAAGGTTAGGTTCAACGACCCGAATGCAGAGCGTCCTCACTTCTCAACAAAGCTAATTGGCAATGACAATGCCATAGCAAGGCACGGAATCCATGGATTGTATAGTTTGTATAGTGTAGGTGTAGATAGTGATCAATTGGTAAAAGGAGAGAACATCATCTATTTGACACAGTCATTTGCAGAAGGTCCTTTCATGGGAGTTATGTATGATTATATTCGCTTAGAAAGTCCTCCAACGGCTACTGAACCTTGTGCATAG 2055 0.4209 MKVTYHVRKQFSTYCCFKLVLHLSLLLLTASSEPSTVFNNLAARPSRPPVKLNTENPHQVVIGNGIVSFNLSKPKGHIIGIYTGITNLLESKNKENDRGYLDVVWNEKGKAGKYQRVVGTNFSVIVANENIVEVSFSRTWTASMKGSSVPINIDHRYILRRGDSGFYSYVIFERTPGLPAAEVYQARIVFKLNKARFHYLAISDTRQRNMPSQSDRELGTPLEYPEAVLLNHPSDSQFKGEVDDKYQYSSENKDSGVHGWIAKDDIAAAAEGFWVITPSNEFRSAGPIKQELTSHVGPTTLSMFTSTHYGGKDVTMNFGEGETYKKVFGPIFVYLNSSPNKARFQSLWSDAVKQLSEEVRRWPYDFVGSKDFIPPNQRGKVSGTLQVQDRTRKAQPAKNAYVGLALPGNAGSWQKECKGYQFWTQTDINGHFLIENVVPGDYKLYAWVHGFIGDYIYPAKISIKPGGNINLDSLVYYPPRNGPTLWEIGIPDRSAAEFYVPDPDPGFRNKLYPSNGPDKFRQYGLWARYSELYPKNDLIYTVGVSDYHKDWFFAHVTRRTEEKTYMPTTWQIRFQLQNIIKGGNYTLQLAIAAATISKLKVRFNDPNAERPHFSTKLIGNDNAIARHGIHGLYSLYSVGVDSDQLVKGENIIYLTQSFAEGPFMGVMYDYIRLESPPTATEPCA 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01360 684 CDD RGL4_M 377 474 IPR029413 -
Viun2g01360 684 CDD RGL4_C 486 674 - -
Viun2g01360 684 CDD RGL4_N 59 343 - -
Viun2g01360 684 Gene3D - 373 472 - -
Viun2g01360 684 Pfam Polysaccharide lyase family 4, domain III 484 673 IPR029411 -
Viun2g01360 684 SUPERFAMILY Galactose mutarotase-like 54 339 IPR011013 GO:0003824|GO:0005975|GO:0030246
Viun2g01360 684 FunFam Rhamnogalacturonate lyase B 374 471 - -
Viun2g01360 684 SUPERFAMILY Starch-binding domain-like 373 473 IPR013784 GO:0030246
Viun2g01360 684 Pfam Polysaccharide lyase family 4, domain II 398 470 IPR029413 -
Viun2g01360 684 SUPERFAMILY Galactose-binding domain-like 481 674 IPR008979 -
Viun2g01360 684 Pfam Rhamnogalacturonate lyase family 47 242 IPR010325 -
Viun2g01360 684 Gene3D - 53 353 IPR014718 GO:0030246
Viun2g01360 684 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 53 677 - -
Viun2g01360 684 Gene3D - 482 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01360 Viun-Chr2 24244784 24250487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01360 50 676 Polysaccharide Lyase AT1G09890 55.678 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01360 K18195 - gmx:100781089 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01360 2 24244784 24250487 Viun3g03150 3 37826391 37831622 PCT