Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01359 ATGAAGCTTGAAGTTACTTGCAGAAAGGGTTTGAGGACTACTGCTGCTGCTGTCAAGCTGAATAAAAATGAAGACCAGGTGATAAATGTAGTGATTGAAAACGGCATAGTTTCCCTGAATTTGTCAAATCCCGGAGGCTATATTATTGGACTATACTATGACGGAACTCAAAATATACTTGATCAAAAAAACCATCAATTTGATAGAGGGTACTTTGACGTTGTTTGGAACGAGGGAGGAAAATCTGGGATCTTTGAGAGATTCAGTGGGACAAAGTTCTCAGTCATTGAAGCAAGTGATACTGTGGTGGAGGTTTCCTTTCTAAAAACATGGAGTGCTTCCATGAAAGGCTCAAGTGTCCCCATAAACATAGACTTAAGGTATATATTGCGAAGAGGCGATTCTGGGTTTTATACATACGCAATATTTAATCGTCCACCAGGATTACCTGCAGTCACGGTTTATCAAATTAGAACTGTTTACAAACTCGACGAAGACAGGTTCCACTATATGGCCTTATCTGATACAAGGCAAAGGAAGATGCCAACTGCAGAAGATAGAAAAACGGGCCAGGCGCTGGCGTATCCTGAAGCTGTTCTCTTAACCCATGCAGCTGACCCACAAATTCGAGGAGAGGTTGATGATAAATACCAATACTCGGCAGAGAACAAAGATAACTCTGTTCATGGGTGGATTACAGAGGATGATTCAGCACCAGTGGGTTTCTGGTTGATAACTCCCAGTAATGAGTTCCGCAATGGTGGGCCCGTTAAACAAGAACTCACTTCTCATGTTGGCTCAACTTCTCTTTCCATGTTTACCAGCACTCATTATGCTGGCAAGAAGGCAATCACTGCATTTGATGAAGGGGAGACTTACACGAAGGTTTTTGGGCCAATTTTTGTTTACCTTAACTCTGTGCCAACCAAAACTCAGTTTAAGTCTCTGTGGTCAGATGCTGTAACACAGTTATCCAATGAAGAAAAAAAATGGCCTTATGATTTCATTGGATCAAAAGATTTCTTTCCACCCCAACAACGGGGAAAGGTGTCAGGAAAGCTTCAAGTTAATGATGGGGGAATGGCTCAACCAGCTGAAAGTTCTTACATTGGTCTAGCTTTACCTGGAGATGCAGGATCATGGCAAATAGAAAGCAAGGGTTATCAATTCTGGACTCAAACCGACAAAGATGGAAGCTTCTCAATTACAAATATTGTACCTGGGAGTTACAACTTGTATGCATGGGTCCCTGGTTTCATTGGAAATTATAAATATGAAGTCAATGTTGATATCAAACCAGGAGGCAACATCAACTTGGGTTCTCTTGTATACAATCCTCCAAGAAATGGTCCTACTTTATGGGAAATTGGGATCCCGGATAGGTCAGCTGCAGAGTTCCATGTACCAGACCCTTACCCAGATCTTGAGAACAAATTGTACCTAAACGATAACAAAAATGGGTTTAGGCAATACGGTTTGTGGGGACGTTACGCTGATTTGTATCCAAAAGAAGATCTCATTTTTACAGTCGGTGTTTCTGACTATCATAAGAATTGGTTTTATGCTCAAGTTACCAGGAGCACAGAACCGGGCAAATTCGTTCCAACCACATGGCAGATTCAGTTCCAGCTTGAGAATATCATAGAGGGAGGAAACTACACACTGCAATTGGCCTTGGCAGCTGCCACTAATTCTAGATTGGAGGTTAGGATCAACAAGCCGAATTCAAACCCTCCATACTTCTCATCACAAGAGTTAATTGGCAGTGACAATGCCATAGCGAGGCACGGCATCCATGGATTGTATGAGTTGTATAGTGTAGGTGTAGATAGTAATCAATTGGTAAAAGGAAAAAACACCATCTACTTGACACAGTCAAATGCCAAATCTCTATTTGAAGGAATTATGTATGATTATATTCGATTGGAAAGTCCTCCAACAACTAGAAGACATCTGCCTTGA 1962 0.4144 MKLEVTCRKGLRTTAAAVKLNKNEDQVINVVIENGIVSLNLSNPGGYIIGLYYDGTQNILDQKNHQFDRGYFDVVWNEGGKSGIFERFSGTKFSVIEASDTVVEVSFLKTWSASMKGSSVPINIDLRYILRRGDSGFYTYAIFNRPPGLPAVTVYQIRTVYKLDEDRFHYMALSDTRQRKMPTAEDRKTGQALAYPEAVLLTHAADPQIRGEVDDKYQYSAENKDNSVHGWITEDDSAPVGFWLITPSNEFRNGGPVKQELTSHVGSTSLSMFTSTHYAGKKAITAFDEGETYTKVFGPIFVYLNSVPTKTQFKSLWSDAVTQLSNEEKKWPYDFIGSKDFFPPQQRGKVSGKLQVNDGGMAQPAESSYIGLALPGDAGSWQIESKGYQFWTQTDKDGSFSITNIVPGSYNLYAWVPGFIGNYKYEVNVDIKPGGNINLGSLVYNPPRNGPTLWEIGIPDRSAAEFHVPDPYPDLENKLYLNDNKNGFRQYGLWGRYADLYPKEDLIFTVGVSDYHKNWFYAQVTRSTEPGKFVPTTWQIQFQLENIIEGGNYTLQLALAAATNSRLEVRINKPNSNPPYFSSQELIGSDNAIARHGIHGLYELYSVGVDSNQLVKGKNTIYLTQSNAKSLFEGIMYDYIRLESPPTTRRHLP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01359 653 Pfam Rhamnogalacturonate lyase family 15 213 IPR010325 -
Viun2g01359 653 SUPERFAMILY Galactose-binding domain-like 449 643 IPR008979 -
Viun2g01359 653 Pfam Polysaccharide lyase family 4, domain III 452 642 IPR029411 -
Viun2g01359 653 Gene3D - 450 643 - -
Viun2g01359 653 Pfam Polysaccharide lyase family 4, domain II 368 438 IPR029413 -
Viun2g01359 653 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 21 646 - -
Viun2g01359 653 SUPERFAMILY Starch-binding domain-like 342 440 IPR013784 GO:0030246
Viun2g01359 653 SUPERFAMILY Galactose mutarotase-like 31 307 IPR011013 GO:0003824|GO:0005975|GO:0030246
Viun2g01359 653 Gene3D - 342 440 - -
Viun2g01359 653 CDD RGL4_M 346 442 IPR029413 -
Viun2g01359 653 CDD RGL4_C 454 643 - -
Viun2g01359 653 Gene3D - 10 318 IPR014718 GO:0030246
Viun2g01359 653 CDD RGL4_N 22 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01359 Viun-Chr2 24228175 24235470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01359 30 645 Polysaccharide Lyase AT1G09880 53.418 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01359 K18195 - gmx:100781089 958.362