Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01358 ATGATGATGGAAACTAATACGAGGAAACAAGTTCCGCTCCAATGGTGGTTTAGAAAGGCTTTGCTTCTCAGCTTAATCTTTTTCGCTTTCTGCTCTGACACTTCTCAGAGTGTCTCGTTTAGAAGGGGTTTGAAGACTACTACTGCTGCTGTCAAGCTGAATAAAAATCAAGACCAGGTAGTGATCGGAAACGGCATAGTTTCCCTGAATTTGTCAAATCCCGAAGGCTATATTATTGGACTATATTATGACGGAACTCAGAATATACTTGATAATAAAAACGAACAATTTGATAGAGGGTACTTAGACGTTGTTTGGAACGAAGCAGGACAACCTGGGATCTTTGAGAGAATCCATGGGACAAAATTCTCAGTCATTGAAGCAAGTGATACTGTGGTGGAGATTTCCTTTTTAAAAACATGGAGTGCTTCCATGAAAGGCTCAAGTGTACCCATAAACATAGACTTAAGGTATATATTACGAAGAGGCGATTCTGGGTTTTATTCATACGCAATATTTACTCGTCCACCAGGACTTCCTGCAGTCACGGTTGATCAAATTAGAATTGTTTACAAACTCGACGAAGACAGGTTCCACTATATGGCCATATCTGATACAAGGCAAAGGAAGATGCCAACTGCAGAAGACAGAAGAACGGGCCAGGTCCTGGCGTATCCTGAAGCTGTTCTCTTAACCCATGAAACTGACCCACAAATTCGAGGAGAGGTTGATGATAAATACCAATACTCGACAGAGAACAAAGATAACTCTGTTCATGGGTGGATTACAGAGGATGATTCAGCACCAGTGGGTTTCTGGGTGATAACTCCCAGTAATGAGTTCCGCAATGGTGGGCCCGTTAAACAAGAACTCACTTCTCATGTTGGCCCAACTTCTCTTTCCATGTTTACTAGCACTCATTATGCTGGTAAGAAGGTAATCATTGCATTTGATGAAGGGGAGACTTATAAAAAAGTTTTTGGGCCAATTTTTGTTTATCTTAACTCTGCTACAACCAAAACTCAGTTTAAGTCTCTGTGGGCAGATGCTGTAGAACAGTTATCCAATGAAGAAAAAAAATGGCCTTATGATTTCATTGGATCAAAAGATTTTTTTCCATCCAGTCAACGGGGAATGGTGTCAGGAAAACTTCAAGTTAAAGATGGGGGAGGGACCACTCAGCCAGCTAAAAGTTCTTACGTTGGTCTAGCTTTACCTGGAGATGCAGGATCATGGCAAATAGAAAGCAAGGGTTATCAATTCTGGACTCAAACTGACAAAGATGGAAGCTTCTCAATTACAAATATTGTACCTGGGAGTTACAACTTGTATGCATGGGTCCCTGGTTTCATTGGAAATTATAAATATGAAGTCAATGTTGATATCAAACCAGGAGACAACATAAACTTGGGTTCACTTGTATACAGTCCTCCAAGAAATGGTCCTACTTTATGGGAAATTGGGATCCCAGATAGGTCAGCTGCGGAGTTCTATGTACCAGACCCTTACCCAAAGCTTGTGAACAAATTGTACCTAAACGATAGCAAAAACAGGTTTAGGCAATACGGCTTGTGGGGACGTTACACTGATTTATATCCAAAAAAAGATCTCATTTTCACAGTCGGTGTTTCTGAGTATCAGAAGGATTGGTTTTATGCTCAAGTTACCAGGACCACAGAACCGGGCAAATTCGTTCCAACCACATGGCAGATTCAATTCCAGCTTGAGAATATCATAAAGGGAGCAAACTACACACTGCAATTGGCCTTGGCATCTGCCACTAATTCTGAATTGGAGGTTAGGATCAACAAGCCGAATTCAAACCCTCCATACTTCTCATCACAAGATTTAATTGGCAGTGACAATGCCATAGCGAGGCACGGCATCCATGGATTGTATAAGTTGTACAGTGTAGGTGTAAACAGTAATCAATTGGTAAAAGGAAAAAACACCATCTATTTGACACAGTCAAATGCCAAAACTCCATTTGAAGGAATTATGTATGATTATATTCGATTGGAGACTCCTCCAACAACTAAAAAATAA 2046 0.4057 MMMETNTRKQVPLQWWFRKALLLSLIFFAFCSDTSQSVSFRRGLKTTTAAVKLNKNQDQVVIGNGIVSLNLSNPEGYIIGLYYDGTQNILDNKNEQFDRGYLDVVWNEAGQPGIFERIHGTKFSVIEASDTVVEISFLKTWSASMKGSSVPINIDLRYILRRGDSGFYSYAIFTRPPGLPAVTVDQIRIVYKLDEDRFHYMAISDTRQRKMPTAEDRRTGQVLAYPEAVLLTHETDPQIRGEVDDKYQYSTENKDNSVHGWITEDDSAPVGFWVITPSNEFRNGGPVKQELTSHVGPTSLSMFTSTHYAGKKVIIAFDEGETYKKVFGPIFVYLNSATTKTQFKSLWADAVEQLSNEEKKWPYDFIGSKDFFPSSQRGMVSGKLQVKDGGGTTQPAKSSYVGLALPGDAGSWQIESKGYQFWTQTDKDGSFSITNIVPGSYNLYAWVPGFIGNYKYEVNVDIKPGDNINLGSLVYSPPRNGPTLWEIGIPDRSAAEFYVPDPYPKLVNKLYLNDSKNRFRQYGLWGRYTDLYPKKDLIFTVGVSEYQKDWFYAQVTRTTEPGKFVPTTWQIQFQLENIIKGANYTLQLALASATNSELEVRINKPNSNPPYFSSQDLIGSDNAIARHGIHGLYKLYSVGVNSNQLVKGKNTIYLTQSNAKTPFEGIMYDYIRLETPPTTKK 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01358 681 FunFam Rhamnogalacturonate lyase B 373 470 - -
Viun2g01358 681 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 677 - -
Viun2g01358 681 Gene3D - 50 352 IPR014718 GO:0030246
Viun2g01358 681 CDD RGL4_M 376 473 IPR029413 -
Viun2g01358 681 SUPERFAMILY Starch-binding domain-like 372 471 IPR013784 GO:0030246
Viun2g01358 681 SUPERFAMILY Galactose-binding domain-like 480 674 IPR008979 -
Viun2g01358 681 Gene3D - 481 674 - -
Viun2g01358 681 Pfam Polysaccharide lyase family 4, domain III 483 673 IPR029411 -
Viun2g01358 681 CDD RGL4_C 485 674 - -
Viun2g01358 681 Pfam Rhamnogalacturonate lyase family 44 243 IPR010325 -
Viun2g01358 681 Pfam Polysaccharide lyase family 4, domain II 397 469 IPR029413 -
Viun2g01358 681 CDD RGL4_N 59 342 - -
Viun2g01358 681 Gene3D - 372 471 - -
Viun2g01358 681 SUPERFAMILY Galactose mutarotase-like 53 337 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01358 Viun-Chr2 24215768 24222400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01358 21 676 Polysaccharide Lyase AT1G09880 52.395 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01358 K18195 - gmx:100781089 988.023