Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01338 ATGGCATTAACGCGTAGTAACGTGAAAGAGTTTATAAGCGATGGCGAGGCATCGCCTAGGGCGATTCTGGAAACCCCTGTTTCGGAAACAGAGTCCGAGACAGATACGTCGATAGAGAGCGGAAAAGACGGTTACATGTTGCCATGGAAGTCTATGGTTGACGTTTTCAAGTTCAAGTCTGTGCGAAAATTAACTTCCATTCCTTTGCTTTCGGTGAGCCATGATATCTCTCGGAAGGGTTTGACCAAAAAACTGGCTCGTATTCGAAGTGCCGAAGACGGCATTGATATTGGAGATATTCCCGCCAAACCCTCTTGGAGAAACTTTGATTATGAAGAGTTAGCAGCTGCTACTAAAGATTTCAGTGCTGAGAACTTGGTTGGGAAAGGTGGTCATGCTGAAGTGTACAAAGGGTGTTTACCTGATGGTCAAATTATAGCAGTAAAGAGGCTAATGAAGAATGAAAAGGACGCTGCAGATAGAGCTGGTGATTTTTTGACAGAGCTAGGGATTATTGCACACATAAACCACACAAATGCAACGCACCTTGTTGGGTTTGGGGTTGATGGAGGCCTCTTCTTTGTCCTGCAATTAGCTCCGCATGGAAGTCTCAGTTCTTTGCTTTTTGGTTCTGAAGGCATGGACTGGGAAAAACGATTCAAGGTAGCTGTTGGAGTGGCTGATGGATTGCATTATCTCCATAAAGAGTGTCCAAGGCGAATCATTCATAGGGACATCAAGGCCTCCAACATCCTACTAAACGATAATTACGAAGCTGAGATTTCAGATTTTGGACTGGCAAAGTGGCTTCCAAACAAATGGGCCAACCATGTTGTCTTCCCAATAGAAGGCACATTTGGGTATTTGGCTCCGGAGTATTTTATGCATGGAATTGTTGATGAGAGAACTGATGTATTTGCATTTGGAGTTTTACTGTTGGAGCTCATAACTGGCCGTCGTGCAGTTGATTCAGATAGTAGGCAAAGTCTTGTCACTTGGGCGAAGCCACTGCTAGACACACGCAATGTAAAGGACATAGCAGACCCCAGATTAGGAGAGGCATATGATCGTACAGAAATGATGCGTGTCATGGTGACAGCTTCGATGTGTGTCCACCATGCATCCTCCAAGCGGCCATTCATGAACAAGGTTGTGCAGCTGCTAAAGGGTGAAGAGGCAATTATAGACATTAAGCAGACAATTGAACCAAAATCTCAATTGTTAGAGGCATGTGACCTAGAAGATTATACTTGCTCAAGTTACCTGAAGGACATGAGTCGCCACATGCAACTGATCATGGAGTGA 1305 0.446 MALTRSNVKEFISDGEASPRAILETPVSETESETDTSIESGKDGYMLPWKSMVDVFKFKSVRKLTSIPLLSVSHDISRKGLTKKLARIRSAEDGIDIGDIPAKPSWRNFDYEELAAATKDFSAENLVGKGGHAEVYKGCLPDGQIIAVKRLMKNEKDAADRAGDFLTELGIIAHINHTNATHLVGFGVDGGLFFVLQLAPHGSLSSLLFGSEGMDWEKRFKVAVGVADGLHYLHKECPRRIIHRDIKASNILLNDNYEAEISDFGLAKWLPNKWANHVVFPIEGTFGYLAPEYFMHGIVDERTDVFAFGVLLLELITGRRAVDSDSRQSLVTWAKPLLDTRNVKDIADPRLGEAYDRTEMMRVMVTASMCVHHASSKRPFMNKVVQLLKGEEAIIDIKQTIEPKSQLLEACDLEDYTCSSYLKDMSRHMQLIME 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01338 434 Gene3D Transferase(Phosphotransferase) domain 1 200 406 - -
Viun2g01338 434 Gene3D Phosphorylase Kinase; domain 1 99 196 - -
Viun2g01338 434 ProSiteProfiles Protein kinase domain profile. 121 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01338 434 Pfam Protein kinase domain 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01338 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Viun2g01338 434 ProSitePatterns Protein kinases ATP-binding region signature. 127 149 IPR017441 GO:0005524
Viun2g01338 434 SUPERFAMILY Protein kinase-like (PK-like) 105 407 IPR011009 -
Viun2g01338 434 SMART serkin_6 121 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01338 434 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 96 198 - -
Viun2g01338 434 PANTHER OS08G0249100 PROTEIN 28 411 IPR046958 -
Viun2g01338 434 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 200 402 - -
Viun2g01338 434 MobiDBLite consensus disorder prediction 20 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01338 Viun-Chr2 24021149 24025981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01338 109 384 Trihelix Transcription Factor Family AT1G68690 45.614 7.68e-72 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Viun2g01338 Pkinase 3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01338 - - gmx:100818314 676.011