Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01336 ATGGCACGTGCCACTAACTGGTTATCGTTCTCCCTCTCCCCCATGGAAATGCTCCGAACCTCTGAACCTCAGTTCGTGCAATACGACGCCGCTTCCGCCGCAACTAACTCGCACAACTACTTTCTCGATAACTTGTACACCAACGGGTGGGGAAACGGGAACCTCAAACCTCAGATGCTGATGGAGCAGAATCTGAACCAGAACGACGTCAGTTTTGTCGAATCCTCCCAGTCGCAGAGTGTCAGCCACGCGCCACCGCCAAAGCTTGAGGACTTTCTCGGCGACTCCTCCGCGGTGATGCGTTATTCCGACAGCCAGACGGAGACGCAGGACTCATCGCTGACTCACATGTATGACCACCATCATGGCTCTGCGTACTTTGGCGACCAGCAGGATCTCAAGGCCATTGCTGGTTTTCAAGCTTTTTCTACCAACTCTGGCTCCGAGGTTGATGATTCGGCATCCATTGGAAAAGTGCAACCCAGCGAGTTCGGGACTCACTCTGTTGAGTCCTCTGGAAACGAGTTTGCCGCGTTTTCCGGTGGTCCCACCGGCACTCTCTCGCTGGCTGTCGCGCAGAGCTCTGAGAAGGCCGTCGTGGCAGCAGATTCCGGTAGCTCGAAGAAGATCGTGGATACCTTCGGCCAGCGGACTTCTATTTACAGAGGTGTCACCAGGCACCGATGGACAGGTAGATATGAAGCGCATCTTTGGGACAACAGTTGCAGAAGAGAGGGTCAAGCCAGGAAAGGGCGTCAAGTTTATTTGGGTGGATACGATAAGGAAGAAAAAGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTGTGTCCAATTATTCAAAGGAACTGGAGGAGATGAAGCATGCAACGAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGTAGCGGCTTCTCTAGGGGAGCTTCGATATACAGAGGTGTCACAAGGCATCATCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGCGTAGCTGGAAACAAAGATCTCTACCTGGGAACATTCGCAACGGAAGAGGAGGCGGCGGAGGCATATGACATTGCTGCAATAAAGTTCAGAGGTGCAAACGCAGTAACCAATTTTGAGATGAACAGATACGATGTGGAAGCTATAATGAAGAGTGCTCTTCCGGTGGGTGGTGCAGCGAAACGCTTGAAGCTTTCCCTTGAATCGGAGCAGAAAGTTGGTGTGAGCAGCAGTCAGCAGAATCCACCGTGTGGAAACGTGAGTGGCAGCATAAATTTCTCGGCCATTCACCAGCCTATTGCTTCAATCCCTTGTGGAATTCCCTTTGATTCTTCGGCAGCGTATTATCATCACAACCTTTTCCAACATTTTCATCCTTCCAACGCCGGCACGGCAGTTTCCACCGTCACTTCCGGCAATGCAACTGGGCTTACTGCACTTCCTCCACCGGCGACGACCGCAGCTGAGTTCTTCATTTGGCCTCACCAGTCTTATTGA 1518 0.5184 MARATNWLSFSLSPMEMLRTSEPQFVQYDAASAATNSHNYFLDNLYTNGWGNGNLKPQMLMEQNLNQNDVSFVESSQSQSVSHAPPPKLEDFLGDSSAVMRYSDSQTETQDSSLTHMYDHHHGSAYFGDQQDLKAIAGFQAFSTNSGSEVDDSASIGKVQPSEFGTHSVESSGNEFAAFSGGPTGTLSLAVAQSSEKAVVAADSGSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYSKELEEMKHATKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSALPVGGAAKRLKLSLESEQKVGVSSSQQNPPCGNVSGSINFSAIHQPIASIPCGIPFDSSAAYYHHNLFQHFHPSNAGTAVSTVTSGNATGLTALPPPATTAAEFFIWPHQSY 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01336 505 CDD AP2 321 380 IPR001471 GO:0003700|GO:0006355
Viun2g01336 505 ProSiteProfiles AP2/ERF domain profile. 322 380 IPR001471 GO:0003700|GO:0006355
Viun2g01336 505 Pfam AP2 domain 322 372 IPR001471 GO:0003700|GO:0006355
Viun2g01336 505 Pfam AP2 domain 220 278 IPR001471 GO:0003700|GO:0006355
Viun2g01336 505 FunFam AP2-like ethylene-responsive transcription factor 321 382 - -
Viun2g01336 505 SUPERFAMILY DNA-binding domain 321 381 IPR016177 GO:0003677
Viun2g01336 505 FunFam AP2-like ethylene-responsive transcription factor ANT 219 288 - -
Viun2g01336 505 PRINTS Ethylene responsive element binding protein signature 362 382 IPR001471 GO:0003700|GO:0006355
Viun2g01336 505 PRINTS Ethylene responsive element binding protein signature 221 232 IPR001471 GO:0003700|GO:0006355
Viun2g01336 505 CDD AP2 219 288 IPR001471 GO:0003700|GO:0006355
Viun2g01336 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 79 419 - -
Viun2g01336 505 SMART rav1_2 322 386 IPR001471 GO:0003700|GO:0006355
Viun2g01336 505 SMART rav1_2 220 292 IPR001471 GO:0003700|GO:0006355
Viun2g01336 505 ProSiteProfiles AP2/ERF domain profile. 220 286 IPR001471 GO:0003700|GO:0006355
Viun2g01336 505 Gene3D AP2/ERF domain 220 288 IPR036955 GO:0003700|GO:0006355
Viun2g01336 505 Gene3D AP2/ERF domain 322 382 IPR036955 GO:0003700|GO:0006355
Viun2g01336 505 SUPERFAMILY DNA-binding domain 219 288 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01336 Viun-Chr2 24011822 24016597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01336 40 505 AP2-EREBP Transcription Factor Family AT5G10510 56.887 9.21e-180 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun2g01336 AP2 9.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01336 K09285 - gmx:100777168 854.744