Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01335 ATGGATTCAATCCAAACACAGAAAGTTTATGTTGCTGTTGGTAATGATGCACAGGATGGATTTAAGACTTTGAATTGGGCTCTAAAGAAATGGAATTCTCATCCAATTTCCGTTGTTATTCTCCATGTCACACACAATACTCCCATGGATTATGTCTATACACCATTTGGGAAACTGCCAGCAAGATCTGTGAGTGAGGAGAAACTACAAATTCTCAGGAAAGATGAACAAGAGAAAATCAACAAGCTGTTTTCCAAGTATGTTGCTTTCTGTGGCAAGGTGCCAGCAGAGATTCTTCAAGTTGAGAAATCAGATGAGCCAATGCAAAAGCGAGTCATAGACTTGATCTTTGGTCTAGGAATAACCAAACTGGTCATGGGATTTTCATTCATGAAGCCCTCCATGAAATCTAAAGGTGCTATTAGTGGATTGTTCTATGTTCATCAGCACAAGCCTTCCTTCTGCGAACTGTTCATTATTTGTGGGGAGCAAATTTTCCTGAGAGGAAAAAATGATGAGAAAATCATGGAGGATGATCATGGAGTCATGGTTGCAAGAATAAGAGATAAGATAACCTTCAAAGATTGGTTAGACAAATGGTTCAATGACAAAACCCACGATTCTCCAGATAAAAGTGAATCACTTTCCTCAAGCAATTTGGAGTCCCCGGTGACCAGAAACCAGTGGGAATTTTACCTGCAGGAAATTGAAAATTATTATCAAGAATTGTTGTCTTCCAAGTTGGAGGAAGGAAACTGCGGGCTAGATAATGACGACTCACAGATTGGTCCAAACGAGCCACATGTCACTGAACACAACAATTATAATATGAGTGGTGCAGAGAAAATTGAAGATCTGAAAAGTCAGCTGAAGGAAGCTCAGAAGACCATTCTATTGAAGAGGAAAGAGGCCAAAGATAGTAAAGAAAGGCACGCAAAAGCTGAATGGGCAATTTGTCTGTGCAACAATAGAGCTGAGGAGGTGGAAGGTCGAATTCGAGAAGAGGTGGGTGCTAAGGAGGAGCTAAAGAAGGAATGGGAAGCGGAGAGGGAGCAGACGGAGGAGATGAGGATGGAGGTGGAAGAGAGGAGGAGGAGGCTCATTTCTCTGACGGAGGTGCAATCGGAGCTCTCCAACAAGCTTCAAATATGGATGCTGGCCAAGACGCGGGCGGAGACGCAGCTCGAGAGGGCGGTAGGGGAGAGAACGGAGATGGTGAGGGAGATCGAGGAGCTCAGGCGCCAGAGAGACGTGCTTAACCGAAGGATCGAGTTCTGCAAGCAGAAGGACGCAATTGGAATGGCCGCCAGACTCGCCGACACGCGCTGCACCTTCCGCGAGTACACGGCGGAGGAGATCCGGCTGGCCACCGACAACTTCTCCGAGCGGCTGAGGTTGAAGTCCGGCGGAGATTGGAGCAATGTGTACAGGGGACGCTTCAACCACTCCACTGTTGCCATCAAGATGCTCCCTTCTTTCTCCCTCCAACATTTCCAATCGAAGGTGAGGCTTCTTGGTGATATTAGGCATCCTCATCTGATTGCCATGGTGGGGTTTTGCTCCGAGCCCAAGTGCATAGTTTTGGAATACATGCGCAACGGAAGCTTAAGAGACATGCTGTTTTCTAGGAGAAAAAACCGCGCTTTAAGATGGCACGACCGAATACGAATTGCCATAGAAGTTTGTTCAGGTCTGGGCTTTCTCAATGGAGCTGAACCAAGGCCCGTCATTCACTGCCATTTGACTCCATCCACAGTCCTCCTAGACCGCAATTTGGTGGCAAAGATCACGGGCTTTGGGCTCCATGATTGCACTGACGAACAGTGTAACGTCGAGTCAGATTTGCAGGCTATAGGGGTTTTGCTGATGCATCTTTTGACAGGAAGAAATTGGGCCGGGCTCGTTGAGGAGGTGATGACAGTGGATATGGACAGAGAGGCTTTGGCTAGCGTTCTTGATGAGATGGCTGGACAATGGCCATTGGATCTAGCAATAGAACTTGCAGGCCTGGCTTTGATGTGCGTGTCCACCAAAACCAAGCCTAACTCAGAACTGAGCATTGCAAAGGTGTTGGAGGAACTGAATGAGATAAGAAGAAAGGGGGATGAAATAGTTGGAAGGGAAGGACGAAAAGCAATTCTTGGTGGGTGTATAGATAGAGAGGGAACCAGTGATGTGCCTAGTGTTTTTCTTTGCCCCATACTTCAGGAGGTAATGAAAAACCCACACTTGGCAGCAGATGGGTTTTCCTATGAGCTTGAAGCAATAGACCACTGGCTGCAGTCTGGGCGTGACACATCACCAATGACAAATATGAGGCTGAAACACACATTTCTCACCCCGAATCACACTCTCCGTTCCCTAATTGAGGATTGGCAGACCAATAAATCACCTAAACTTACACACTAA 2409 0.4662 MDSIQTQKVYVAVGNDAQDGFKTLNWALKKWNSHPISVVILHVTHNTPMDYVYTPFGKLPARSVSEEKLQILRKDEQEKINKLFSKYVAFCGKVPAEILQVEKSDEPMQKRVIDLIFGLGITKLVMGFSFMKPSMKSKGAISGLFYVHQHKPSFCELFIICGGXQIFLRGKNDEKIMEDDHGVMVARIRDKITFKDWLDKWFNDKTHDSPDKSESLSSSNLESPVTRNQWEFYLQEIENYYQELLSSKLEEGNCGLDNDDSQIGPNEPHVTEHNNYNMSGAEKIEDLKSQLKEAQKTILLKRKEAKDSKERHAKAEWAICLCNNRAEEVEGRIREEVGAKEELKKEWEAEREQTEEMRMEVEERRRRLISLTEVQSELSNKLQIWMLAKTRAETQLERAVGERTEMVREIEELRRQRDVLNRRIEFCKQKDAIGMAARLADTRCTFREYTAEEIRLATDNFSERLRLKSGGDWSNVYRGRFNHSTVAIKMLPSFSLQHFQSKVRLLGDIRHPHLIAMVGFCSEPKCIVLEYMRNGSLRDMLFSRRKNRALRWHDRIRIAIEVCSGLGFLNGAEPRPVIHCHLTPSTVLLDRNLVAKITGFGLHDCTDEQCNVESDLQAIGVLLMHLLTGRNWAGLVEEVMTVDMDREALASVLDEMAGQWPLDLAIELAGLALMCVSTKTKPNSELSIAKVLEELNEIRRKGDEIVGREGRKAILGGCIDREGTSDVPSVFLCPILQEVMKNPHLAADGFSYELEAIDHWLQSGRDTSPMTNMRLKHTFLTPNHTLRSLIEDWQTNKSPKLTH 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01335 803 Coils Coil 277 311 - -
Viun2g01335 803 ProSiteProfiles Protein kinase domain profile. 462 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01335 803 ProSiteProfiles U-box domain profile. 726 800 IPR003613 GO:0004842|GO:0016567
Viun2g01335 803 PANTHER OS02G0152300 PROTEIN 9 791 - -
Viun2g01335 803 SUPERFAMILY RING/U-box 724 797 - -
Viun2g01335 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 725 801 IPR013083 -
Viun2g01335 803 Pfam U-box domain 727 797 IPR003613 GO:0004842|GO:0016567
Viun2g01335 803 SUPERFAMILY Protein kinase-like (PK-like) 445 656 IPR011009 -
Viun2g01335 803 Pfam Protein tyrosine and serine/threonine kinase 471 609 IPR001245 GO:0004672|GO:0006468
Viun2g01335 803 Coils Coil 396 430 - -
Viun2g01335 803 SMART Ubox_2 730 793 IPR003613 GO:0004842|GO:0016567
Viun2g01335 803 Coils Coil 326 371 - -
Viun2g01335 803 Gene3D Transferase(Phosphotransferase) domain 1 447 705 - -
Viun2g01335 803 CDD RING-Ubox_WDSUB1-like 728 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01335 Viun-Chr2 23985850 23989941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01335 7 802 U-box Gene Family AT5G65500 49.567 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun2g01335 PK_Tyr_Ser-Thr 6.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01335 - - gmx:100786771 1352.81